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| postgwas-package | GWAS post-processing utilities |
| biomartConfigs | Configuration Lists for Biomart Access |
| bm.id2name | Conversion Between Gene IDs And Names |
| bm.name2id | Conversion Between Gene IDs And Names |
| bm.remapSnps | Annotate Position to SNPs |
| getGenotypes | Retrieve Genotypes |
| getInteractions.domains | Retrieve Biological Interaction Network Data |
| getInteractions.GO | Retrieve Biological Interaction Network Data |
| getInteractions.ppi | Retrieve Biological Interaction Network Data |
| getSnpsByRS | Retrieve SNPs from local file or database with additional attributes |
| getSnpsByWin | Retrieve SNPs from local file or database with additional attributes |
| gwas2network | Highlight GWAS Results in Interaction Networks |
| gwas2network.plot | Automatically Scaled Graph Plot |
| ldGenes | Evaluate LD between SNPs and their Neighboring Genes |
| LDparallel | Calculate Pairwise Linkage Disequilibrium with Multiple Threads |
| LDparallel.genotype | Calculate Pairwise Linkage Disequilibrium with Multiple Threads |
| manhattanplot | Generate a Manhattan Plot from GWAS Data |
| postgwas | Default GWAS Visualization, Annotation and Network |
| postgwasBuffer | Postgwas Buffer Variable Usage |
| regionalplot | Create Regional Association Plots of Multiple GWAS Datasets |
| removeNeighborSnps | Remove SNPs within a Specified Range from a Data Frame |
| snp2gene | Annotate Genes to SNPs |
| snp2gene.LD | Annotate Genes to SNPs |
| snp2gene.prox | Annotate Genes to SNPs |
| ytracks.regionalplot | Generate a Base Tracks Object for Regionalplots |