Protein Sequence Feature Extraction with R


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Documentation for package ‘protr’ version 0.1-0

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protr-package Protein Sequence Feature Extraction with R
AAindex AAindex Data of 544 Physicochemical and Biological Properties for 20 Amino Acids
extractAAC Amino Acid Composition Descriptor
extractAPAAC Amphiphilic Pseudo Amino Acid Composition Descriptor
extractCTDC CTD Descriptors - Composition
extractCTDD CTD Descriptors - Distribution
extractCTDT CTD Descriptors - Transition
extractCTriad Conjoint Triad Descriptor
extractDC Dipeptide Composition Descriptor
extractGeary Geary Autocorrelation Descriptor
extractMoran Moran Autocorrelation Descriptor
extractMoreauBroto Normalized Moreau-Broto Autocorrelation Descriptor
extractPAAC Pseudo Amino Acid Composition Descriptor
extractQSO Quasi-Sequence-Order (QSO) Descriptor
extractSOCN Sequence-Order-Coupling Numbers
extractTC Tripeptide Composition Descriptor
getUniProt Get Protein Sequences from UniProt by Protein ID
protcheck Check if the protein sequence's amino acid types are in the 20 default types
protr Protein Sequence Feature Extraction with R
protseg Protein Sequence Segmentation
readFASTA Read Protein Sequences in FASTA Format