Bayesian undirected graph estimation with BDMCMC algorithm


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Documentation for package ‘BDgraph’ version 2.3

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BDgraph-package Bayesian undirected graph estimation with BDMCMC algorithm
BDgraph Bayesian undirected graph estimation with BDMCMC algorithm
bdmcmc BDMCMC algorithm for undirected graph estimation
bdmcmc.high BDMCMC algorithm for high-dimensional graphs
bdmcmc.low BDMCMC algorithm for low-dimensional graphs
compare Comparing the result according to the true graph
I.g Computing normalizing constant of G-Wishart distribution
phat Posterior edge inclusion probabilities
plotConvergency Cumulative occupancy fractions for checking the convergency
plotLinks Plot of posterior distribution for graphs according to number of their links
prob.allg Posterior probability of all possible graphs
prob.g Posterior probability for a specific graph
select.g Selecting the best graphical models based on BDMCMC algorithm