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| BOG-package | BOG is a package for identifying differentially regulated genes in the light of gene functions. |
| anthracis | Bacillus anthracis str. 'Ames Ancestor' |
| anthracis_iron | anthracis_iron |
| BOG | BOG |
| BOGest | BOGest |
| BOGprint | BOGprint |
| BOGstat | BOGstat |
| brucella | Brucella suis 1330 |
| coxiella | Coxiella burnetii RSA 493 |
| difficile | Clostridium difficile 630 |
| DIMEplot | DIMEplot |
| ecoli | Escherichia coli O157:H7 str. Sakai |
| francisella | Francisella tularensis subsp. holarctica LVS |
| gseaplot | gseaplot |
| hgplot | hgplot |
| internalhgplot | internalhgplot |