Ensemble Network Aggregation


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Documentation for package ‘ENA’ version 1.3-0

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adj2mat Convert adjacency list into an adjacency matrix.
bootstrap Bootstrap the reconstruction of a network
buildAracne Reconstruct network using Aracne
buildGenenet Reconstruct network using GeneNet
buildSpace Reconstruct network using SPACE
buildWgcna Reconstruct network using WGCNA
edgeCutoff Compute a binary network from a continuous rank-product network.
ena Perform ensemble network aggregation
getTableAddressing Get the adjacency list addressing template.
mat2adj Convert a matrix to an adjacency list
net1345 Sample network topology using 1345 genes with interactions based on observed protein-protein interaction networks.
net17 Sample network topology using 17 genes with interactions based on observed protein-protein interaction networks.
net231 Sample network topology using 231 genes with interactions based on observed protein-protein interaction networks.
net44 Sample network topology using 44 genes with interactions based on observed protein-protein interaction networks.
net613 Sample network topology using 613 genes with interactions based on observed protein-protein interaction networks.
net83 Sample network topology using 83 genes with interactions based on observed protein-protein interaction networks.
simulateNetwork Simulate a gene expression dataset.
symmetricize Make a matrix symmetric
tri2mat Convert triangular elements to full matrix.