IBDhaploRtools-package | Functions for the Analysis of IBD Haplo output |
cumul.sum | cumulative.sums |
get.counts | get counts |
h.to.g | Convert haplotype states to genotype states |
ibdhap.barplot | create ibd barplot |
ibdhap.compare | ibdhap compare |
ibdhap.correct.bylen | create data frame comparing inference vs simulated data by segment length |
ibdhap.make.states | ibdhap.make.states |
ibdhap.names | Get chromosome names |
ibdhap.reduce.states | ibdhap reduce states |
ibdhap.seg.lengths | ibdhap.seg.lengths |
ibdhap.summary | ibdhap summary |
ibdhap.transitions | create transition matrix |
IBDhaploRtools | Functions for the Analysis of IBD Haplo output |
ids_phased | Example MORGAN IBDhaplo output |
ids_unphased | Example MORGAN IBDhaplo output |
make.col.vec | make color vector |
meet.cutoff | meet cutoff |
posvec | Example MORGAN IBDhaplo output |
qibd_phased | Example MORGAN IBDhaplo output |
qibd_unphased | Example MORGAN IBDhaplo output |
removezeros | remove zeros |
return.ibd.val | return ibd value |
sumcol | sum over specific columns |
trueibd_phased | Example MORGAN IBDhaplo output |