A Model-based Approach to Identify Binding Sites in CLIP-Seq Data


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Documentation for package ‘MiClip’ version 1.2

Help Pages

Chi The demo dataset for 'MiClip' package
MiClip A Model-based Approach to Identify Binding Sites in CLIP-Seq Data
MiClip.adaptor Trim 3' adaptor
MiClip.binding Identify binding sites
MiClip.enriched Identify enriched bins
MiClip.galaxy Wrapper function for running MiClip on Galaxy
MiClip.read Read raw sequencing data
MiClip.snp Distinguish possible SNPs from high confidence CLIP binding sites
MiClip.sum Summary of MiClip Inference Results
test2 The demo dataset for 'MiClip' package
test3 The demo dataset for 'MiClip' package
test4 The demo dataset for 'MiClip' package