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A B C D E F G H K L M N O P Q R S T U V W
| Morpho-package | loads of stuff relating to Geometric Morphometrics and shape analysis |
| adnormals | Compute face or vertex normals of a triangular mesh |
| anonymize | Replace ID-strings of data and associated files. |
| bindArr | concatenate multiple arrays/matrices |
| bone1 | predefined colors for bone and skin |
| bone2 | predefined colors for bone and skin |
| bone3 | predefined colors for bone and skin |
| boneLM | Landmarks and a triangular mesh |
| cExtract | extract information about fixed landmarks, curves and patches from and atlas generated by "landmark" |
| closemeshKD | Project coordinates onto a target triangular surface mesh. |
| conv2backf | invert faces' orientation of triangular mesh |
| covDist | calculate distances and PC-coordinates of covariance matrices |
| covPCA | calculate distances and PC-coordinates of covariance matrices |
| covW | calculate the pooled within groups covariance matrix |
| crossp | calculate the orthogonal complement of a 3D-vector |
| CVA | Canonical Variate Analysis |
| deformGrid3d | visualise differences between two superimposed sets of 3D landmarks |
| export | plot or save the results of meshDist |
| export.meshDist | plot or save the results of meshDist |
| exVar | calculate variance of a distribution stemming from a prediction model |
| exVar.lm | calculate variance of a distribution stemming from a prediction model |
| exVar.mvr | calculate variance of a distribution stemming from a prediction model |
| facenormals | Compute face or vertex normals of a triangular mesh |
| file2mesh | Import 3D surface mesh files |
| find.outliers | Graphical interface to find outliers and/or to switch mislabeld landmarks |
| fixLMtps | estimate missing landmarks |
| groupPCA | Perform PCA based of the group means' covariance matrix |
| histGroup | plot histogram for multiple groups. |
| kendalldist | Calculates the Riemannian distance between two superimposed landmark configs. |
| lineplot | plot lines between landmarks |
| mesh2grey | convert a colored mesh to greyscale. |
| mesh2mesh | projects the vertices of a mesh onto the surface of another one. |
| mesh2obj | export mesh objects to disk. |
| mesh2ply | export mesh objects to disk. |
| meshDist | calculates and visualises distances between surface meshes or 3D coordinates and a surface mesh. |
| meshDist.matrix | calculates and visualises distances between surface meshes or 3D coordinates and a surface mesh. |
| meshDist.mesh3d | calculates and visualises distances between surface meshes or 3D coordinates and a surface mesh. |
| Morpho | loads of stuff relating to Geometric Morphometrics and shape analysis |
| name2factor | extract data from array names |
| name2num | extract data from array names |
| NNshapeReg | Estimate the shape by averaging the shape of the nearest neighbours. |
| obj2mesh | Import 3D surface mesh files |
| pcaplot3d | visualization of shape change |
| pcaplot3d.nosymproc | visualization of shape change |
| pcaplot3d.symproc | visualization of shape change |
| PCdist | correlation between a reduced space and the original space |
| permudist | performs permutation testing for group differences. |
| permuvec | perfom permutation testing on angles and distances between subgroups of two major groups. |
| plotNormals | plots the normals of a triangular surface mesh. |
| pls2B | Two-Block partial least square regression. |
| ply2mesh | Import 3D surface mesh files |
| proc.weight | calculate weights inverse to the distances from the specified observation. |
| procSym | Procrustes registration |
| projRead | Project points onto the closest point on a mesh |
| qqmat | Q-Q plot to assess normality of data |
| r2morphoj | Export data to MorphoJ and Morphologika |
| r2morphologika | Export data to MorphoJ and Morphologika |
| ray2mesh | projects the vertices of a mesh onto the surface of another one. |
| read.csv.folder | batch import data from files |
| read.lmdta | read dta files |
| read.mpp | Read saved pick-points from meshlab |
| read.pts | reads pts files |
| readallTPS | Import landmarks and outlines from TPS files |
| readLandmarks.csv | import landmark data from csv files |
| regdist | correlation between shape space and tangent space |
| relaxLM | relax one specific 3D landmark configuration against a reference |
| relWarps | calculate relative Warp analysis |
| render | plot or save the results of meshDist |
| render.matrixDist | plot or save the results of meshDist |
| render.meshDist | plot or save the results of meshDist |
| rmUnrefVertex | some little helpers for vertex operations on triangular meshes |
| rmVertex | some little helpers for vertex operations on triangular meshes |
| rotaxis3d | Rotate an object around an arbitrary axis in 3D |
| rotaxis3d.matrix | Rotate an object around an arbitrary axis in 3D |
| rotaxis3d.mesh3d | Rotate an object around an arbitrary axis in 3D |
| rotaxisMat | calculate a rotation matrix around an arbitrary axis through the origin in 3D |
| rotmesh.onto | rotate ,scale and translate a mesh based on landmark information. |
| rotonmat | rotate matrix of landmarks |
| rotonto | rotates, translates and scales one matrix onto an other using Procrustes fitting |
| rotreverse | rotates, translates and scales one matrix onto an other using Procrustes fitting |
| scalemesh | scale a mesh of class "mesh3d" |
| showPC | convert PCs to landmark configuration |
| skin1 | predefined colors for bone and skin |
| skin2 | predefined colors for bone and skin |
| skin3 | predefined colors for bone and skin |
| skin4 | predefined colors for bone and skin |
| skull_0144_ch_fe.mesh | a triangular mesh |
| slider3d | slides Semilandmarks along curves and surfaces in 3D by minimising bending energy of a thin-plate spline deformation. |
| tanplan | calculate the orthogonal complement of a 3D-vector |
| tps3d | thin plate spline mapping |
| typprob | calculate typicality probabilities |
| typprobClass | calculate typicality probabilities |
| unrefVertex | some little helpers for vertex operations on triangular meshes |
| vecx | convert an 3D array into a matrix |
| vert2points | some little helpers for vertex operations on triangular meshes |
| warp.mesh | warping a mesh onto another configuration |
| warpmovie2d | Creates a sequence of images showing predefined steps of warping two meshes or landmark configurations (2D and 3D) into each other |
| warpmovie3d | Creates a sequence of images showing predefined steps of warping two meshes or landmark configurations (2D and 3D) into each other |
| warpmovie3d.matrix | Creates a sequence of images showing predefined steps of warping two meshes or landmark configurations (2D and 3D) into each other |
| warpmovie3d.mesh3d | Creates a sequence of images showing predefined steps of warping two meshes or landmark configurations (2D and 3D) into each other |
| write.pts | exports a matrix containing landmarks into .pts format |