MultiChIPmixHMM, an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates.


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Documentation for package ‘MultiChIPmixHMM’ version 5.0

Help Pages

data_Rep1 example of data
data_Rep2 example of data
makeRegions Concatenation of adjacent probes with the same status
multiChIPmix Linear Regression Mixture Model to analyse one or several biological replicates of ChIP-chip data
MultiChIPmixHMM Hidden Markov Model with linear regression to analyse one or several biological replicates of ChIP-chip data
multiChIPmixHMM Hidden Markov Model with linear regression to analyse one or several biological replicates of ChIP-chip data