NHMMfdr-package | Compute FDR under dependence using NHMM |
compute.A.nhmm | Compute transition probability (internal function) |
compute.gradient | Intermediate function |
em.hmm | Intermediate function |
em.indep | Intermediate function |
em.nhmm | Intermediate function |
fdr.nhmm | FDR control based for multiple hypothesis tests under dependence |
find.nu | Intermediate function |
forwardbackward | Intermediate function |
forwardbackward1 | Intermediate function |
forwardbackward1.indep | Intermediate function |
forwardbackward1.indep.kernel | Intermediate function |
forwardbackward1.kernel | Intermediate function |
LIS.adjust | Determine statistically significant tests at a user-specified FDR level. |
NHMMfdr | Compute FDR under dependence using NHMM |
simdata.nhmm | Simulate from a non-homogeneous hidden Markov Model (NHMM). |
simdata1.nhmm | Intermediate function |
update_delta2 | Intermediate function |
update_trans.prob.nhmm | Intermediate function |