Prediction of condition-specific transcription factor interactions


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Documentation for package ‘OneHandClapping’ version 1.5

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OneHandClapping-package Prediction of condition-specific transcription factor interactions
biogridList.71 TF interactions from BioGRID
colorsbreaks Generate color palette and breaks for heatmaps
getFun Class '"siscreen.IntScore"'
getFun-method Class '"siscreen.IntScore"'
getInteractions Class '"Screening"'
getInteractions-method Class '"Screening"'
getParams Class '"siscreen.IntScore"'
getParams-method Class '"siscreen.IntScore"'
getValidated Class '"Screening.validated"'
getValidated-method Class '"Screening.validated"'
hclust-class Class '"hclust"'
OneHandClapping Prediction of condition-specific transcription factor interactions
plot-method Class '"Screening"'
salt.folds mRNA folds after 30 min of 0.8M NaCl stimulation relative to wildtype
Screening-class Class '"Screening"'
Screening.validated-class Class '"Screening.validated"'
siscreen Perform OneHandClapping
siscreen.IntScore-class Class '"siscreen.IntScore"'
siscreen.lr Interaction Score for OneHandClapping
siscreen.paircluster Prediction Funtion for OneHandClapping
siscreen.validate.biogrid Validation using BioGRID for OnehandClapping
yeastract Yeastract database, TF-target relations