A C D E F G H I L M O P R S T misc
SoilR-package | Models of Soil Organic Matter Decomposition |
AbsoluteFractionModern_from_Delta14C | convert its argument to an Absolute Fraction Modern representation |
AbsoluteFractionModern_from_Delta14C-method | ~~ Methods for Function 'AbsoluteFractionModern_from_Delta14C' ~~ |
AbsoluteFractionModern_from_Delta14C-methods | ~~ Methods for Function 'AbsoluteFractionModern_from_Delta14C' ~~ |
as.character | creates a character representation of the object in question |
as.character-method | ~~ Methods for Function 'as.character' ~~ |
as.character-methods | ~~ Methods for Function 'as.character' ~~ |
C14Atm | $^14C$ fraction in per mille |
C14Atm_NH | Post-bomb atmospheric 14C fraction |
Delta14C_from_AbsoluteFractionModern | convert its argument from an Absolute Fraction Modern to a Delta14C representation |
Delta14C_from_AbsoluteFractionModern-method | ~~ Methods for Function 'Delta14C_from_AbsoluteFractionModern' ~~ |
Delta14C_from_AbsoluteFractionModern-methods | ~~ Methods for Function 'Delta14C_from_AbsoluteFractionModern' ~~ |
deSolve.lsoda.wrapper | deSolve lsoda wrapper |
eCO2 | Soil CO2 efflux from incubation experiments |
FcAtm.from.Dataframe | FcAtm from Dataframe |
fT.Arrhenius | Effects of temperature on decomposition rates according the Arrhenius equation |
fT.Century1 | Effects of temperature on decomposition rates according the the CENTURY model |
fT.Century2 | Effects of temperature on decomposition rates according the the CENTURY model |
fT.Daycent1 | Effects of temperature on decomposition rates according to the DAYCENT model |
fT.Daycent2 | Effects of temperature on decomposition rates according to the DAYCENT model |
fT.Demeter | effects of temperature on decomposition rates according to the DEMETER model |
fT.KB | Effects of temperature on decomposition rates according to a model proposed by M. Kirschbaum (1995) |
fT.LandT | Effects of temperature on decomposition rates according to a function proposed by Lloyd and Taylor (1994) |
fT.linear | Effects of temperature on decomposition rates according to a linear model |
fT.Q10 | Effects of temperature on decomposition rates according to a Q10 function |
fT.RothC | Effects of temperature on decomposition rates according to the functions included in the RothC model |
fT.Standcarb | effects of temperature on decomposition rates according to the StandCarb model |
fW.Candy | Effects of moisture on decomposition rates according to the Candy model |
fW.Century | Effects of moisture on decomposition rates according to the CENTURY model |
fW.Daycent1 | Effects of moisture on decomposition rates according to the DAYCENT model |
fW.Daycent2 | #Effects of moisture on decomposition rates according to the DAYCENT model |
fW.Demeter | Effects of moisture on decomposition rates according to the DEMETER model |
fW.Gompertz | Effects of moisture on decomposition rates according to the Gompertz function |
fW.Moyano | Effects of moisture on decomposition rates according to the function proposed by Moyano et al. (2013) |
fW.RothC | Effects of moisture on decomposition rates according to the RothC model |
fW.Skopp | Effects of moisture on decomposition rates according to the function proposed by Skopp et al. 1990 |
fW.Standcarb | Effects of moisture on decomposition rates according to the StandCarb model |
GaudinskiModel14 | Implementation of a the six-pool C14 model proposed by Gaudinski et al. 2000 |
GeneralModel | The most general costructor for class Model |
GeneralModel_14 | The most general costructor for class Model14 |
getAccumulatedRelease | Calculates the accumulated carbon release from the pools as a function of time |
getAccumulatedRelease-method | ~~ Methods for Function 'getAccumulatedRelease' ~~ |
getAccumulatedRelease-methods | ~~ Methods for Function 'getAccumulatedRelease' ~~ |
getC | Calculates the C content of the pools |
getC-method | ~~ Methods for Function 'getC' ~~ |
getC-methods | ~~ Methods for Function 'getC' ~~ |
getC14 | access to the C content of the pools |
getC14-method | ~~ Methods for Function 'getC14' ~~ |
getC14-methods | ~~ Methods for Function 'getC14' ~~ |
getF14 | access to the C content of the pools |
getF14-method | ~~ Methods for Function 'getF14' ~~ |
getF14-methods | ~~ Methods for Function 'getF14' ~~ |
getF14C | access to the C release flux from the pools |
getF14C-method | ~~ Methods for Function 'getF14C' ~~ |
getF14C-methods | ~~ Methods for Function 'getF14C' ~~ |
getF14R | access to the C release flux from the pools |
getF14R-method | ~~ Methods for Function 'getF14R' ~~ |
getF14R-methods | ~~ Methods for Function 'getF14R' ~~ |
getFunctionDefinition | getFunctionDefinition |
getFunctionDefinition-method | ~~ Methods for Function 'getFunctionDefinition' ~~ |
getFunctionDefinition-methods | ~~ Methods for Function 'getFunctionDefinition' ~~ |
getReleaseFlux | Calculates the release of C from each pool |
getReleaseFlux-method | ~~ Methods for Function 'getReleaseFlux' ~~ |
getReleaseFlux-methods | ~~ Methods for Function 'getReleaseFlux' ~~ |
getReleaseFlux14 | access to the C content of the pools |
getReleaseFlux14-method | ~~ Methods for Function 'getReleaseFlux14' ~~ |
getReleaseFlux14-methods | ~~ Methods for Function 'getReleaseFlux14' ~~ |
getTimeRange | getTimeRange |
getTimeRange-method | ~~ Methods for Function 'getTimeRange' ~~ |
getTimeRange-methods | ~~ Methods for Function 'getTimeRange' ~~ |
getTimes | extract the times argumen |
getTimes-method | ~~ Methods for Function 'getTimes' ~~ |
getTimes-methods | ~~ Methods for Function 'getTimes' ~~ |
HarvardForest14CO2 | Delta14C in soil CO2 efflux from Harvard Forest |
Hua2013 | Atmospheric radiocarbon for the period 1950-2010 from Hua et al. (2013) |
ICBMModel | Implementation of the Introductory Carbon Balance Model (ICBM) |
IntCal09 | Northern Hemisphere atmospheric radiocarbon for the pre-bomb period |
linesCPool | Add lines with the output of 'getC14', 'getC', or 'getReleaseFlux' to an existing plot |
Model | Model |
Model-class | Model |
Model_14 | Model_14 |
Model_14-class | Model_14 |
OnepModel | Implementation of a one pool model |
OnepModel14 | Implementation of a one-pool C14 model |
ParallelModel | ParallelModel |
plot-method | ~~ Methods for Function 'plot' ~~ |
plot-methods | ~~ Methods for Function 'plot' ~~ |
plotC14Pool | Plots the output of 'getC14' for each pool over time |
plotCPool | Plots the output of 'getC' or 'getReleaseFlux' for each pool over time |
print-method | ~~ Methods for Function 'print' ~~ |
print-methods | ~~ Methods for Function 'print' ~~ |
RespirationCoefficients | helper function to compute respiration coefficients |
RothCModel | Implementation of the RothCModel |
SoilR | Models of Soil Organic Matter Decomposition |
SoilR.F0.new | creates an object containing the initial values for the 14C fraction needed to create models in SoilR |
summary-method | ~~ Methods for Function 'summary' ~~ |
summary-methods | ~~ Methods for Function 'summary' ~~ |
ThreepFeedbackModel | Implementation of a three pool model with feedback structure |
ThreepFeedbackModel14 | Implementation of a three-pool C14 model with feedback structure |
ThreepParallelModel | Implementation of a three pool model with parallel structure |
ThreepParallelModel14 | Implementation of a three-pool C14 model with parallel structure |
ThreepSeriesModel | Implementation of a three pool model with series structure |
ThreepSeriesModel14 | Implementation of a three-pool C14 model with series structure |
TimeMap | TimeMap S4 class |
TimeMap-class | TimeMap S4 class |
TimeMap.from.Dataframe | TimeMap from Dataframe |
TimeMap.new | basic constructor of the class TimeMap. |
TwopFeedbackModel | Implementation of a two pool model with feedback structure |
TwopFeedbackModel14 | Implementation of a two-pool C14 model with feedback structure |
TwopParallelModel | Implementation of a two pool model with parallel structure |
TwopParallelModel14 | Implementation of a two-pool C14 model with parallel structure |
TwopSeriesModel | Implementation of a two pool model with series structure |
TwopSeriesModel14 | Implementation of a two-pool C14 model with series structure |
$-method | ~~ Methods for Function '$' ~~ |
$-methods | ~~ Methods for Function '$' ~~ |
[-method | Model |
[-method | ~~ Methods for Function '[' ~~ |
[-methods | ~~ Methods for Function '[' ~~ |
[[-method | ~~ Methods for Function '[[' ~~ |
[[-methods | ~~ Methods for Function '[[' ~~ |
[[<--method | ~~ Methods for Function '[[<-' ~~ |
[[<--methods | ~~ Methods for Function '[[<-' ~~ |