Circular layout in R


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Documentation for package ‘circlize’ version 0.0.7

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circlize-package circos layout in R
circlize Return the coordinate in polar coordinate system in a specified cell
circos.axis Draw x-axis
circos.clear Reset the circos layout parameters and internal variables
circos.initialize Initialize the circos sectors
circos.initializeWithIdeogram Initialize the circos layout with an ideogram
circos.lines Add lines to the plotting region
circos.link Draw links between points or intervals
circos.par Parameters for circos layout
circos.points Add points to a plotting region
circos.polygon Draw polygon
circos.rect Draw rectangle-like grid
circos.text Draw text in a cell
circos.trackHist Draw histogram in cells among a whole track
circos.trackLines Add lines to the plotting regions in a same track
circos.trackPlotRegion Create plotting regions for a whole track
circos.trackPoints Add points to the plotting regions in a same track
circos.trackText Draw text in cells among the whole track
circos.updatePlotRegion Update the plotting region in an existed cell
cytoband.col Assign colors to cytogenetic band according to the Giemsa stain results
draw.sector Draw sectors or rings in a circle
get.cell.meta.data Get the meta data for a cell
read.cytoband Read cytoband data
show.index Label the sector index and the track index of each cell