Genetic diversity partition statistics and Informative locus selection using Fst, Gst, Dest(Jost Chao) G'st and In.


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Documentation for package ‘diveRsity’ version 1.5.0

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bigDivPart Genetic differentiation statistics and their estimators for high throughput data (e.g. RAD-seq derived SNPS)
Big_data Example infile for diveRsity package
chiCalc A functions for the assessment of population genetic heterogeneity
corPlot A function to plot the relationship between Gst, G'st, Theta, D (Jost) and the number of alleles at a locus.
difPlot A function to plot pairwise statistics calculated by divPart.
div.part Genetic differentiation statistics and their estimators
divBasic A function to calculate basic population parameters such as allelic richness, observed heterozygosity, as well as expected heterozygosity.
divOnline A function to launch a web app version of 'diveRsity' from the local system.
divPart Genetic differentiation statistics and their estimators
divRatio Calculates the standardised diversity ratios relative to a 'yardstick' reference population following Skrbinsek et al., 2012.
fstOnly A minimal function for the calculate of Weir & Cockerham's (1984) F_ST and F_IT from codominant molecular data in the genepop format.
in.calc A function to calculate locus informative for the inference of ancestry
inCalc A function to calculate locus informative for the inference of ancestry
pop_stats Example pop_stats data frame for use in the function 'divRatio'
readGenepop A function to calculate allele frequencies from genepop files.
readGenepop.user A function to calculate allele frequencies from genepop files.
Test_data Example infile for diveRsity package