geomorph-package | Geometric morphometric analyses for 2D/3D data |
arrayspecs | Convert landmark data matrix into array (p x k x n) |
bilat.symmetry | Analysis of bilateral symmetry |
buildtemplate | Build 3D surface template |
compare.evol.rates | Comparing rates of shape evolution on phylogenies |
compare.modular.partitions | Compare modular signal to alternative landmark subsets |
curves2d | Defunct functions in geomorph |
define.sliders.2d | Select points to "slide" along two-dimensional curves. |
define.sliders.3d | Choose points to "slide" along three-dimensional curves. |
digit.curves | Defunct functions in geomorph |
digit.fixed | Digitize 3D landmarks |
digitize2d | Digitize 2D landmarks. |
digitsurface | Digitize 3D fixed landmarks and surface semilandmarks. |
editTemplate | Edit 3D template |
estimate.missing | Estimate locations of missing landmarks using the thin-plate spline |
fixed.angle | Rotate a subset of 2D landmarks to common articulation angle |
geomorph | Geometric morphometric analyses for 2D/3D data |
gpagen | Generalized Procrustes analysis of points, curves, and surfaces |
hummingbirds | Landmark data from hummingbird bills (includes sliding semilandmarks on curves) |
morphol.integr | Quantify morphological integration between two modules |
mosquito | landmarks on mosquito wings |
motionpaths | Simulated motion paths |
mshape | Estimate mean shape for a set of aligned specimens |
pairwiseD.test | Pairwise Group Comparisons |
physignal | Assessing phylogenetic signal in morphometric data |
plethodon | Landmark data from Plethodon salamander heads |
plethspecies | Average head shape and phylogenetic relationships for several Plethodon salamander species |
plotAllometry | Plot allometric patterns in landmark data |
plotAllSpecimens | Plot landmark coordinates for all specimens |
plotGMPhyloMorphoSpace | Plot phylogenetic tree and specimens in tangent space |
plotRefToTarget | Plot shape differences between a reference and target specimen |
plotspec | Plot 3D specimen, fixed landmarks and surface semilandmarks. |
plotTangentSpace | Plot specimens in tangent space |
procD.lm | Procrustes ANOVA/regression for shape data |
ratland | Landmark data from dataset rat |
read.morphologika | Read 3D landmark data from Morphologika files |
read.ply | Read mesh data (vertices and faces) from ply files |
read.vrml | Read landmark data from vrml files |
readland.nts | Read landmark data matrix from nts file |
readland.tps | Read landmark data from tps file |
readmulti.nts | Read landmark data from multiple nts files |
scallopPLY | 3D scan of a scallop shell from a .ply file in mesh3d format |
scallops | Landmark data from scallop shells |
trajectory.analysis | Quantify and compare shape change trajectories |
two.d.array | Convert (p x k x n) data array into 2D data matrix |
writeland.tps | Write landmark data to tps file |