Aeut |
Oomycete root rot pathogen _Aphanomyces euteiches_ AFLP data |
bruvo.boot |
Create a tree using Bruvo's Distance with non-parametric bootstrapping. |
bruvo.dist |
Calculate the average Bruvo's Distance over all loci in a population. |
bruvo.msn |
Create minimum spanning network of selected populations using Brvuo's distance. |
bruvomat-class |
bruvomat object |
clonecorrect |
Remove potential bias caused by cloned genotypes in genind object. |
dim-method |
Methods used for the bruvomat object. |
diss.dist |
Calculate a distance matrix based on relative dissimilarity |
genind2genalex |
Exporting data from genind objects to genalex formatted *.csv files. |
getfile |
Get a file name and path and store them in a list. |
greycurve |
Display a greyscale gradient adjusted to specific parameters |
ia |
Index of Association |
informloci |
Remove all non-phylogentically informative loci |
initialize-method |
Methods used for the bruvomat object. |
missingno |
How to deal with missing data in a genind object. |
mlg |
Create counts, vectors, and matrices of multilocus genotypes. |
mlg.crosspop |
Create counts, vectors, and matrices of multilocus genotypes. |
mlg.table |
Create counts, vectors, and matrices of multilocus genotypes. |
mlg.vector |
Create counts, vectors, and matrices of multilocus genotypes. |
partial_clone |
Simulated data illustrating a Minimum Spanning Network based on Bruvo's Distance |
poppr |
Produce a basic summary table for population genetic analyses. |
poppr.all |
Process a list of files with poppr |
poppr.msn |
Create a minimum spanning network of selected populations using a distance matrix. |
popsub |
Subset a 'genind' object by population |
read.genalex |
Importing data from genalex formatted *.csv files. |
shufflepop |
Shuffle individuals in a 'genind' object independently over each locus. |
splitcombine |
Split a or combine items within a data frame in 'genind' objects. |
[-method |
Methods used for the bruvomat object. |