Ordination methods for the analysis of beta-diversity indices.


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Documentation for package ‘recluster’ version 2.5

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dataisl West Mediterranean island butterflies provided with the package recluster
datamod Virtual island faunas provided with the package recluster
multiboot A multiboot result from dataisl dataset.
reCluster Ordination methods for the analysis of beta-diversity indices.
recluster Ordination methods for the analysis of beta-diversity indices.
recluster.boot Bootstrap nodes of consensus trees
recluster.col Projecting a two dimensional plot in RGB space
recluster.cons Consensus tree among re-sampled trees
recluster.dist Compute a dissimilarity matrix using a battery of beta-diversity indices
recluster.expl.diss Compute explained dissimilarity of all possible cuts of a given tree
recluster.group.col Compute mean coordinate values and RGB colours.
recluster.hist Histogram with tied and zero values
recluster.identify.nodes Evaluating solutions in multiscale bootstrap
recluster.multi Multiscale bootstrap based on consensus trees
recluster.node.strength Evaluating order row bias in a cluster
recluster.plot A plotter for recluster bootstrapped objects
recluster.plot.col Plotting data in RGB space
recluster.plot.matrix Plot cell values of a matrix in grey scale
recluster.plot.sites.col Plotting RGB dots on a custom coordinate space
treebut Phylogenetic tree for the butterfly species included in dataisl dataset
treemod Hypothetical phylogenetic tree for the virtual island faunas provided with the package recluster