Mixed models, particularly spatial GLMMs

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Documentation for package ‘spaMM’ version 1.1

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.SpaMM spaMM options settings
AIC Fit mixed models with given correlation matrix
arabidopsis Arabidopsis genetic and climatic data
blackcap Genetic polymorphism in relation to migration in the blackcap
corMatern Matern Correlation Structure as a corSpatial object
corrHLfit Fits a mixed model, typically a spatial GLMM.
designL.from.Corr Computation of "square root" of correlation matrix
fixedLRT Likelihood ratio test of fixed effects.
HLCor Fits a (spatially) correlated mixed model, for given correlation parameters
HLfit Fit mixed models with given correlation matrix
inverse.Gamma Fit mixed models with given correlation matrix
Loaloa Loa loa prevalence in North Cameroon, 1991-2001
Matern.corr Matern correlation function.
Nmatrix Lip cancer in Scotland 1975 - 1980
plot Model checking plots for mixed models
plot.corrHLfit Model checking plots for mixed models
plot.HLCor Model checking plots for mixed models
plot.HLfit Model checking plots for mixed models
predict Prediction from a model fit.
predict.corrHLfit Prediction from a model fit.
predict.HLCor Prediction from a model fit.
predict.HLfit Prediction from a model fit.
Predictor Interface for model formulas
print Summary and print methods for fit and test results.
print.corrHLfit Summary and print methods for fit and test results.
print.fixedLRT Summary and print methods for fit and test results.
print.HLCor Summary and print methods for fit and test results.
print.HLfit Summary and print methods for fit and test results.
scotlip Lip cancer in Scotland 1975 - 1980
simulate Simulate realizations of a fitted correlated mixed model.
simulate.corrHLfit Simulate realizations of a fitted correlated mixed model.
simulate.HLCor Simulate realizations of a fitted correlated mixed model.
simulate.HLfit Simulate realizations of a fitted correlated mixed model.
spaMM Inference in spatial GLMMs (and other non-spatial mixed models)
spaMM.getOption spaMM options settings
spaMM.options spaMM options settings
summary Summary and print methods for fit and test results.
summary.corrHLfit Summary and print methods for fit and test results.
summary.fixedLRT Summary and print methods for fit and test results.
summary.HLCor Summary and print methods for fit and test results.
summary.HLfit Summary and print methods for fit and test results.
update Updates an HLCor or HLfit fit
update.HLfit Updates an HLCor or HLfit fit
wafers Data from a resistivity experiment for semiconductor materials.