![[R logo]](../../../doc/html/logo.jpg){kind=logo}
![[Up]](../../../doc/html/left.jpg){kind=small}
![[Top]](../../../doc/html/up.jpg){kind=small}
| taxize-package | Taxnomic search and phylogeny retrieval. |
| capwords | Capitalize the first letter of a character string. |
| classification | Get taxonomic hierarchy for a given taxon ID. |
| classification.tsn | Get taxonomic hierarchy for a given taxon ID. |
| classification.uid | Get taxonomic hierarchy for a given taxon ID. |
| col_children | Search Catalogue of Life for for direct children of a particular taxon. |
| col_classification | Search Catalogue of Life for taxonomic classifications. |
| col_downstream | Use Catalogue of Life to get downstream taxa to a given taxonomic level. |
| eol_dataobjects | Given the identifier for a data object, return all metadata about the object. |
| eol_hierarchy | Retrieve all taxonomic hierarchy from given EOL taxonID. |
| eol_pages | Search for pages in EOL database using a taxonconceptID. |
| eol_ping | Ping EOL API to see if it's working. |
| eol_search | Search for terms in EOL database. |
| getacceptednamesfromtsn | Get accepted names from tsn |
| getanymatchcount | Get any match count. |
| getcommentdetailfromtsn | Get comment detail from TSN |
| getcommonnamesfromtsn | Get common names from tsn |
| getcoremetadatafromtsn | Get core metadata from tsn |
| getcoveragefromtsn | Get coverge from tsn |
| getcredibilityratingfromtsn | Get credibility rating from tsn |
| getcredibilityratings | Get possible credibility ratings |
| getcurrencyfromtsn | Get currency from tsn |
| getdatedatafromtsn | Get date data from tsn |
| getdescription | Get description of the ITIS service |
| getexpertsfromtsn | Get expert information for the TSN. |
| getfullhierarchyfromtsn | Get full hierarchy from tsn |
| getfullrecordfromlsid | Returns the full ITIS record for the TSN in the LSID, found by comparing the TSN in the search key to the TSN field. Returns an empty result set if there is no match or the TSN is invalid. |
| getfullrecordfromtsn | Get full record from TSN. |
| getgeographicdivisionsfromtsn | Get geographic divisions from tsn |
| getgeographicvalues | Get all possible geographic values |
| getglobalspeciescompletenessfromtsn | Get global species completeness from tsn |
| gethierarchydownfromtsn | Get hierarchy down from tsn |
| gethierarchyupfromtsn | Get hierarchy up from tsn |
| getitistermsfromcommonname | Get itis terms from common names |
| getitistermsfromscientificname | Get itis terms from scientific names |
| getjurisdictionaloriginfromtsn | Get jurisdictional origin from tsn |
| getjurisdictionoriginvalues | Get jurisdiction origin values |
| getjurisdictionvalues | Get possible jurisdiction values |
| getkingdomnamefromtsn | Get kingdom names from tsn |
| getkingdomnames | Get all possible kingdom names |
| getlastchangedate | Provides the date the ITIS database was last updated. |
| getlsidfromtsn | Gets the unique LSID for the TSN, or an empty result if there is no match. |
| getothersourcesfromtsn | Returns a list of the other sources used for the TSN. |
| getparenttsnfromtsn | Returns the parent TSN for the entered TSN. |
| getpublicationsfromtsn | Returns a list of the pulications used for the TSN. |
| getranknames | Provides a list of all the unique rank names contained in the database and their kingdom and rank ID values. |
| getrecordfromlsid | Gets the partial ITIS record for the TSN in the LSID, found by comparing the TSN in the search key to the TSN field. Returns an empty result set if there is no match or the TSN is invalid. |
| getreviewyearfromtsn | Returns the review year for the TSN. |
| getscientificnamefromtsn | Returns the scientific name for the TSN. Also returns the component parts (names and indicators) of the scientific name. |
| getsynonymnamesfromtsn | Returns a list of the synonyms (if any) for the TSN. |
| gettaxonauthorshipfromtsn | Returns the author information for the TSN. |
| gettaxonomicranknamefromtsn | Returns the kingdom and rank information for the TSN. |
| gettaxonomicusagefromtsn | Returns the usage information for the TSN. |
| gettsnbyvernacularlanguage | Retrieve accepted TSN (with accepted name) |
| gettsnfromlsid | Gets the TSN corresponding to the LSID, or an empty result if there is no match. |
| getunacceptabilityreasonfromtsn | Returns the unacceptability reason, if any, for the TSN. |
| getvernacularlanguages | Provides a list of the unique languages used in the vernacular table. |
| get_genes | Retrieve gene sequences from NCBI by accession number. |
| get_genes_avail | Retrieve gene sequences available for a species from NCBI. |
| get_seqs | Retrieve nucleotide sequences from NCBI. |
| get_tsn | Get the TSN code for a search term. |
| get_uid | Get the UID codes from NCBI for species names. |
| gisd_isinvasive | Check invasive species status for a set of species from GISD database |
| gni_details | Search for taxonomic name details using the Global Names Index. |
| gni_search | Search for taxonomic names using the Global Names Index. |
| gnr_datasources | Get data sources for the Global Names Resolver. |
| gnr_resolve | Resolve names using Global Names Resolver. |
| itis_acceptname | Retrieve accepted TSN (with accepted name). |
| itis_downstream | Retrieve all taxa names or TSNs downstream in hierarchy from given TSN. |
| itis_name | Get taxonomic names for a given taxonomic name query. |
| itis_phymat_format | Get family names to make Phylomatic input object, and output input string to Phylomatic for use in the function phylomatic_tree. |
| itis_taxrank | Retrieve taxonomic rank name from given TSN. |
| iucn_summary | Get a summary from the IUCN Red List. |
| phylomatic_tree | Format tree string, submit to Phylomatic, get newick tree. |
| plantminer | Search for taxonomy data from Plantminer.com |
| rank_ref | Lookup-table for IDs of taxonomic ranks |
| searchbycommonname | Search for tsn by common name |
| searchbycommonnamebeginswith | Search for tsn by common name beginning with |
| searchbycommonnameendswith | Search for tsn by common name ending with |
| searchbyscientificname | Search by scientific name |
| searchforanymatch | Search for any match |
| searchforanymatchpaged | Search for any matched page |
| taxize | Taxnomic search and phylogeny retrieval. |
| tax_name | Get taxonomic names for a given taxonomic name query. |
| tnrs | Search the Phylotastic Taxonomic Name Resolution Service. |
| tnrs_sources | Get sources for the Phylotastic Taxonomic Name Resolution Service. |
| tpl_get | Get The Plant List csv files. |
| tpl_search | A light wrapper around the taxonstand fxn to call Theplantlist.org database. |
| tp_acceptednames | Return all accepted names for a taxon name with a given id. |
| tp_namedistributions | Return all distribution records for for a taxon name with a given id. |
| tp_namereferences | Return all reference records for for a taxon name with a given id. |
| tp_summary | Return summary data a taxon name with a given id. |
| tp_synonyms | Return all synonyms for a taxon name with a given id. |
| ubio_namebank | Search uBio namebank. |