Efficiently Read Variant Call Format (VCF) into R


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Documentation for package ‘vcf2geno’ version 2.3

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readVCFToListByGene Read a gene from VCF file and return a genotypes matrix
readVCFToListByRange Read a gene from VCF file and return a genotypes matrix
readVCFToMatrixByGene Read a gene from VCF file and return a genotypes matrix
readVCFToMatrixByRange Read a gene from VCF file and return a genotypes matrix
rvmeta.readCovByRange Read covariance
rvmeta.readDataByGene Read a gene from VCF file and return a genotypes matrix
rvmeta.readDataByRange Read a range from VCF file and return a genotypes matrix
rvmeta.readScoreByRange Read score test statistics