aic |
Accesor and replacement methods for slots of complex objects |
aic,FLSR-method |
Class FLSR |
aic-methods |
Accesor and replacement methods for slots of complex objects |
aic<-,FLSR,numeric-method |
Class FLSR |
apply,FLBiol,list,function-method |
Class FLBiol |
apply,FLIndex,list,function-method |
Class FLIndex |
apply,FLQuant,ANY,ANY-method |
FLQuant class and methods |
apply,FLStock,list,function-method |
Class FLStock for fish stock data and modelling output |
areaMeans |
Common summary operations for FLQuants |
areaSums |
Common summary operations for FLQuants |
as.data.frame,FLQuant,missing,missing-method |
FLQuant class and methods |
as.FLBiol |
Method for creating an FLBiol object from other classes |
as.FLBiol,FLBiol-method |
Method for creating an FLBiol object from other classes |
as.FLBiol-methods |
Method for creating an FLBiol object from other classes |
as.FLFleet |
as.FLFleet method |
as.FLFleet,FLStock-method |
as.FLFleet method |
as.FLFleet-method |
as.FLFleet method |
as.FLIndex |
Method for creating an FLIndex object from other classes |
as.FLIndex,FLFleet-method |
Method for creating an FLIndex object from other classes |
as.FLIndex-methods |
Method for creating an FLIndex object from other classes |
as.FLQuant |
as.FLQuant |
as.FLQuant,array-method |
as.FLQuant |
as.FLQuant,data.frame-method |
as.FLQuant |
as.FLQuant,FLQuant-method |
as.FLQuant |
as.FLQuant,matrix-method |
as.FLQuant |
as.FLQuant,vector-method |
as.FLQuant |
as.FLQuant-methods |
as.FLQuant |
as.FLStock |
FLStock |
as.FLStock,FLFleet-method |
FLStock |
as.FLStock,FLFleets-method |
Class FLFleets |
as.FLStock,FLStock-method |
FLStock |
catch |
Methods for estimating time series from dissagregated data |
catch,FLCatch-method |
Class FLCatch |
catch,FLIndexCom-method |
Class FLIndex |
catch,FLQuant-method |
FLQuant class and methods |
catch,FLStock-method |
Class FLStock for fish stock data and modelling output |
catch.n |
Accesor and replacement methods for slots of complex objects |
catch.n,FLIndexSurvey-method |
Class FLIndex |
catch.n-methods |
Accesor and replacement methods for slots of complex objects |
catch.n<-,FLIndexSurvey,FLQuant-method |
Class FLIndex |
catch.wt |
Accesor and replacement methods for slots of complex objects |
catch.wt,FLIndexCom-method |
Class FLIndex |
catch.wt,FLIndexSurvey-method |
Class FLIndex |
catch.wt-methods |
Accesor and replacement methods for slots of complex objects |
catch.wt<-,FLIndexCom,FLQuant-method |
Class FLIndex |
catch.wt<-,FLIndexSurvey,FLQuant-method |
Class FLIndex |
catch<-,FLIndexCom,FLQuant-method |
Class FLIndex |
covar |
Accesor and replacement methods for slots of complex objects |
covar,FLSR-method |
Class FLSR |
covar-methods |
Accesor and replacement methods for slots of complex objects |
covar<-,FLSR,matrix-method |
Class FLSR |
createFLAccesors |
Create accesor and replecement methods for slots of complex classes |
desc |
Accesor and replacement methods for slots of complex objects |
desc,FLBiol-method |
Class FLBiol |
desc,FLIndex-method |
Class FLIndex |
desc,FLSR-method |
Class FLSR |
desc-methods |
Accesor and replacement methods for slots of complex objects |
desc<-,FLBiol,character-method |
Class FLBiol |
desc<-,FLIndex,character-method |
Class FLIndex |
desc<-,FLSR,character-method |
Class FLSR |
dimnames<-,FLQuant-method |
FLQuant class and methods |
dims |
Provide information onn the dimensions and range of an object |
dims,FLIndex-method |
Provide information onn the dimensions and range of an object |
dims,FLQuant-method |
Provide information onn the dimensions and range of an object |
dims-methods |
Provide information onn the dimensions and range of an object |
discards |
Methods for estimating time series from dissagregated data |
discards,FLCatch-method |
Class FLCatch |
discards,FLQuant-method |
FLQuant class and methods |
discards,FLStock-method |
Class FLStock for fish stock data and modelling output |
distribution |
Accesor and replacement methods for slots of complex objects |
distribution,FLIndex-method |
Class FLIndex |
distribution-methods |
Accesor and replacement methods for slots of complex objects |
distribution<-,FLIndex,character-method |
Class FLIndex |
dotplot,FLQuant-method |
FLCore lattice methods |
dotplot,formula-method |
FLCore lattice methods |
index |
Accesor and replacement methods for slots of complex objects |
index,FLIndex-method |
Class FLIndex |
index-methods |
Accesor and replacement methods for slots of complex objects |
index.q |
Accesor and replacement methods for slots of complex objects |
index.q,FLIndexAcoustic-method |
Class FLIndex |
index.q,FLIndexCom-method |
Class FLIndex |
index.q,FLIndexSurvey-method |
Class FLIndex |
index.q-methods |
Accesor and replacement methods for slots of complex objects |
index.q<-,FLIndexAcoustic,FLQuant-method |
Class FLIndex |
index.q<-,FLIndexCom,FLQuant-method |
Class FLIndex |
index.q<-,FLIndexSurvey,FLQuant-method |
Class FLIndex |
index.var |
Accesor and replacement methods for slots of complex objects |
index.var,FLIndex-method |
Class FLIndex |
index.var-methods |
Accesor and replacement methods for slots of complex objects |
index.var<-,FLIndex,FLQuant-method |
Class FLIndex |
index<-,FLIndex,FLQuant-method |
Class FLIndex |
is.FLBiol |
FLBiol |
is.FLBiols |
Checks for objects of class FLBiols |
is.FLFleet |
FLFleet |
is.FLFleets |
FLFleets |
is.FLIndex |
FLIndex |
is.FLIndexAcoustic |
FLIndex |
is.FLIndexCom |
FLIndex |
is.FLIndexSurvey |
FLIndex |
is.FLIndices |
FLIndices |
is.FLQuant |
as.FLQuant |
is.FLSR |
FLSR |
is.FLStock |
FLStock |
is.FLStocks |
FLStocks |
params |
Accesor and replacement methods for slots of complex objects |
params,FLSR-method |
Class FLSR |
params-methods |
Accesor and replacement methods for slots of complex objects |
params<-,FLSR,matrix-method |
Class FLSR |
params<-,FLSR,vector-method |
Class FLSR |
params<-,FLSR-method |
Class FLSR |
ple4 |
FLCore datasets |
ple4sex |
FLCore datasets |
plot,FLBiol,missing-method |
Class FLBiol |
plot,FLCatch,missing-method |
Class FLCatch |
plot,FLFleet,missing-method |
FLFleet class and methods |
plot,FLIndex,missing-method |
Class FLIndex |
plot,FLQuant,missing-method |
FLQuant class and methods |
plot,FLSR,missing-method |
Class FLSR |
plot,FLStock,missing-method |
Class FLStock for fish stock data and modelling output |
predict,FLSR-method |
Class FLSR |
project,FLStock,FLSTF.control-method |
Class FLStock for fish stock data and modelling output |
read.FLIndex |
Import FLIndices data from a file |
read.FLIndices |
Import FLIndices data from a file |
read.FLStock |
Import stock data from a file |
read.VPAFile |
Import stock data from a file |
rec |
Accesor and replacement methods for slots of complex objects |
rec,FLSR-method |
Class FLSR |
rec-methods |
Accesor and replacement methods for slots of complex objects |
rec<-,FLSR,FLQuant-method |
Class FLSR |
rechat |
Accesor and replacement methods for slots of complex objects |
rechat,FLSR-method |
Class FLSR |
rechat-methods |
Accesor and replacement methods for slots of complex objects |
rechat<-,FLSR,FLQuant-method |
Class FLSR |
residuals |
Accesor and replacement methods for slots of complex objects |
residuals,FLSR-method |
Class FLSR |
residuals-methods |
Accesor and replacement methods for slots of complex objects |
residuals<-,FLSR,FLQuant-method |
Class FLSR |
revenue |
Calculate the revenue of a fleet |
revenue,FLFleet-method |
FLFleet class and methods |
ricker |
Stock-recruitment model function |
se |
Accesor and replacement methods for slots of complex objects |
se,FLSR-method |
Class FLSR |
se-methods |
Accesor and replacement methods for slots of complex objects |
se<-,FLSR,numeric-method |
Class FLSR |
seasonMeans |
Common summary operations for FLQuants |
seasonSums |
Common summary operations for FLQuants |
segreg |
Stock-recruitment model function |
sel.pattern |
Accesor and replacement methods for slots of complex objects |
sel.pattern,FLIndexCom-method |
Class FLIndex |
sel.pattern-methods |
Accesor and replacement methods for slots of complex objects |
sel.pattern<-,FLIndexCom,FLQuant-method |
Class FLIndex |
setPlusGroup |
setPlusgroup for FLStock |
setunits,FLBiol-method |
Class FLBiol |
setunits,FLStock-method |
Class FLStock for fish stock data and modelling output |
show,FLBiols-method |
Class FLBiols |
show,FLQuant-method |
FLQuant class and methods |
show,FLSR.control-method |
Class FLSR.control |
sop |
Calculates the sum of products correction |
spwn |
Accesor and replacement methods for slots of complex objects |
spwn,FLBiol-method |
Class FLBiol |
spwn-methods |
Accesor and replacement methods for slots of complex objects |
spwn<-,FLBiol,FLQuant-method |
Class FLBiol |
sr |
Stock-recruitment model function |
srlkhd |
Likelihood of the S-R parameters |
ssb |
Method for calculating Spawning Stock Biomass |
ssb,FLSR-method |
Class FLSR |
ssb,FLStock-method |
Class FLStock for fish stock data and modelling output |
ssb-methods |
Accesor and replacement methods for slots of complex objects |
ssb<-,FLSR,FLQuant-method |
Class FLSR |
steepvirginbiom |
Change to steepness/virgin biomass parameterisation |
stripplot,FLQuant-method |
FLCore lattice methods |
stripplot,formula-method |
FLCore lattice methods |
summary,FLBiol-method |
Class FLBiol |
summary,FLBiols-method |
Class FLBiols |
summary,FLCatch-method |
Class FLCatch |
summary,FLFleet-method |
FLFleet class and methods |
summary,FLFleets-method |
Class FLFleets |
summary,FLIndex-method |
Class FLIndex |
summary,FLIndices-method |
Class FLIndices |
summary,FLQuant-method |
FLQuant class and methods |
summary,FLSR-method |
Class FLSR |
summary,FLSR.control-method |
Class FLSR.control |
summary,FLStock-method |
Class FLStock for fish stock data and modelling output |
summary,FLStocks-method |
Class FLStocks |
window |
window for FLQuants based classes |
window,FLBiol-method |
window for FLQuants based classes |
window,FLCatch-method |
window for FLQuants based classes |
window,FLFleet-method |
window for FLQuants based classes |
window,FLIndex-method |
window for FLQuants based classes |
window,FLIndices-method |
window for FLQuants based classes |
window,FLQuant-method |
window for FLQuants based classes |
window,FLStock-method |
window for FLQuants based classes |
window-methods |
window for FLQuants based classes |
write.FLStock |
Write FLStock data to a file |
wt |
Accesor and replacement methods for slots of complex objects |
wt,FLBiol-method |
Class FLBiol |
wt-methods |
Accesor and replacement methods for slots of complex objects |
wt<-,FLBiol,FLQuant-method |
Class FLBiol |