haplo.scan.obs {haplo.stats}R Documentation

For observed data, slide a fixed-width window over each marker locus and scan all possible haplotypes within the window

Description

Slide a fixed-width window over each marker locus and scan all possible haplotypes within the window. For all locus-subsets, calculate score test statistics on observed data, and save the necessary information for calculating the test statistics in haplo.scan.sim.

Usage

haplo.scan.obs(y, em.obj, width)

Arguments

y Vector of trait values, must be 1 for cases and 0 for controls.
em.obj A haplo.em object containing necessary haplotype information
width Width of the slide window for scanning

Details

Value

svec Vector of locus-specific maximum test statistics
save.lst A list object containing haplotype information necessary for calculating score test statistics on the simulated data sets in haplo.scan.sim

Side Effects

References

See Also

haplo.scan, haplo.scan.sim, haplo.chistat

Examples



[Package haplo.stats version 1.2.2 Index]