laser-package |
Likelihood Analysis of Speciation/Extinction Rates from Phylogenies |
agamids |
Ultrametric Phylogeny of Australian Agamid Lizards |
batchgam |
Compute Gamma Statistic For Batch of Branching Times |
bd |
Fit Rate-Constant Birth-Death Model to Branching Times |
calcLHbd |
Calculate Likelihood of Branching Times Under Birth-Death Model |
dAICrc.batch |
Generate Null Distribution of dAICrc |
DDL |
Fit Density Dependent Speciation Model to Branching Times |
DDX |
Fit Density Dependent Speciation Model to Branching Times |
fitdAICrc |
Test for Rate Variation Using delta-AICrc Test Statistic |
fitdAICrc.batch |
Generate Null Distribution of dAICrc |
gamStat |
gamStat |
gamStat.batch |
Compute Gamma Statistic For Batch of Branching Times |
getBtimes |
Get Branching Times From Parenthetic-Format Tree ('Newick') |
getBtimes.batch |
Branching Times for Batch of Phylogenies |
plethodon |
plethodon |
plotLtt |
plotLtt |
pureBirth |
pureBirth |
rtrees5 |
Random Phylogenetic Trees |
rtrees50 |
Random Phylogenetic Trees |
rvbd |
Fit Rate-Variable Diversification Model With Extinction to Branching Times |
scaleBranchingtimes |
Scale Branching Times |
summarydAICrc |
Generate Null Distribution of dAICrc |
truncateTree |
Truncate a Set of Branching Times |
yule-n-rate |
yule-n-rate |
yule2rate |
yule-n-rate |
yule3rate |
yule-n-rate |
yule4rate |
yule-n-rate |
yule5rate |
yule-n-rate |
yuleSim |
yuleSim |
yuleWindow |
Fit Yule Model (Pure Birth) to Temporal Window of Branching Times |