Analysis of evolutionary diversification

Documentation for package `geiger' version 0.2-6

geiger-package	GEIGER
ape2ouch	Convert between ape and ouch formats
area.between.curves	Area between two curves
BDsim	Birth-death population simulator
birthdeath.tree	Birth-death tree simulator
crown.limits	Calculate net diversification rate with confindence limits, and test diversities
crown.p	Calculate net diversification rate with confindence limits, and test diversities
delta.tree	Tree transformations
disp.calc	Calculate disparity
dtt	Disparity-through-time
fit.continuous	Model fitting for continuous data
fit.discrete	Model fitting for discrete comparative data
geiger	GEIGER
geospiza	Data from Darwin's finches
ic.sigma	Estimate Evolutionary VCV Matrix
lambda.tree	Tree transformations
likelihood.discrete	Likelihood for discrete character evolution
linearchange.tree	Tree transformations
name.check	Compares taxa in data and tree
phy.anova	Phylogenetic ANOVA and MANOVA
phy.manova	Phylogenetic ANOVA and MANOVA
prune.extinct.taxa	Prune specified taxa from a phylogenetic tree
prune.random.taxa	Prune specified taxa from a phylogenetic tree
rate.estimate	Calculate net diversification rate with confindence limits, and test diversities
rc	Relative cladogenesis test
rescale.tree	Tree transformations
sim.char	Simulate character evolution
stem.limits	Calculate net diversification rate with confindence limits, and test diversities
stem.p	Calculate net diversification rate with confindence limits, and test diversities
tip.disparity	Tip disparity calculation
tworate.tree	Tree transformations