Analysis of evolutionary diversification


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Documentation for package `geiger' version 0.2-6

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geiger-package GEIGER
ape2ouch Convert between ape and ouch formats
area.between.curves Area between two curves
BDsim Birth-death population simulator
birthdeath.tree Birth-death tree simulator
crown.limits Calculate net diversification rate with confindence limits, and test diversities
crown.p Calculate net diversification rate with confindence limits, and test diversities
delta.tree Tree transformations
disp.calc Calculate disparity
dtt Disparity-through-time
fit.continuous Model fitting for continuous data
fit.discrete Model fitting for discrete comparative data
geiger GEIGER
geospiza Data from Darwin's finches
ic.sigma Estimate Evolutionary VCV Matrix
lambda.tree Tree transformations
likelihood.discrete Likelihood for discrete character evolution
linearchange.tree Tree transformations
name.check Compares taxa in data and tree
phy.anova Phylogenetic ANOVA and MANOVA
phy.manova Phylogenetic ANOVA and MANOVA
prune.extinct.taxa Prune specified taxa from a phylogenetic tree
prune.random.taxa Prune specified taxa from a phylogenetic tree
rate.estimate Calculate net diversification rate with confindence limits, and test diversities
rc Relative cladogenesis test
rescale.tree Tree transformations
sim.char Simulate character evolution
stem.limits Calculate net diversification rate with confindence limits, and test diversities
stem.p Calculate net diversification rate with confindence limits, and test diversities
tip.disparity Tip disparity calculation
tworate.tree Tree transformations