landscape.states {rmetasim} | R Documentation |
return a matrix containing the states of the alleles in genotypes for a particular locus
landscape.states(lnum=1,Rland)
lnum |
the locus to return |
Rland |
the Rmetasim landscape object |
Returns a matrix with rows = dim(rland$individuals)[1]
. The
columns 1:landscape.democol() correspond to demographic variables for an individual. The columns are: state, placeholder, birthyear, id, mother's id, and father's id. Here rland is a
landscape object. The remaining columns (1 if haploid, 2 if
diploid) contain the states of the alleles for the selected loci
matrix
landscape.locus
exampleland <- landscape.new.example() exampleland <- landscape.simulate(exampleland, 4) print("Allele frequencies at locus 1") table(landscape.states(1,exampleland)[,c(-1:-landscape.democol())]) rm(exampleland)