plot.scan.gwaa {GenABEL}R Documentation

function to plot GWAA results

Description

Plots results of GWA analysis

Usage

plot.scan.gwaa(x, y, ..., df=1)

Arguments

x object of type scan.gwaa-class, as returned by scan.glm, qtscore, ccfast, emp.ccfast, emp.qtscore, or scan.haplo
y this argument is not used
... additional arguments to be passed to plot
df Plot results of 1 or 2-df test (1, 2). Could be also "Pc1df" (for GC corrected P-values) or "all" (to plot all three)

Value

No value returned.

Author(s)

Yurii Aulchenko

See Also

scan.gwaa-class, add.plot, snp.subset, scan.glm, qtscore, ccfast, emp.qtscore, emp.ccfast, scan.haplo

Examples

data(srdta)
a <- ccfast("bt",srdta,snps=c(1:250))
plot(a)
plot(a,df="all")
a1 <- snp.subset(a,snps=c(20:100))
plot(a1,df="all")

[Package GenABEL version 1.3-1 Index]