plot.scan.gwaa {GenABEL} | R Documentation |
Plots results of GWA analysis
plot.scan.gwaa(x, y, ..., df=1)
x |
object of type scan.gwaa-class , as returned by scan.glm , qtscore ,
ccfast , emp.ccfast , emp.qtscore , or scan.haplo |
y |
this argument is not used |
... |
additional arguments to be passed to plot |
df |
Plot results of 1 or 2-df test (1, 2). Could be also "Pc1df" (for GC corrected P-values) or "all" (to plot all three) |
No value returned.
Yurii Aulchenko
scan.gwaa-class
,
add.plot
,
snp.subset
,
scan.glm
,
qtscore
,
ccfast
,
emp.qtscore
,
emp.ccfast
,
scan.haplo
data(srdta) a <- ccfast("bt",srdta,snps=c(1:250)) plot(a) plot(a,df="all") a1 <- snp.subset(a,snps=c(20:100)) plot(a1,df="all")