A package for graphical modelling in R


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Documentation for package ‘gRbase’ version 0.6.4

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A B C D E F G H I J L M N O P Q R S T U V

-- A --

ancestors Simple operations on undirected and directed acyclic graphs.
ancestralGraph Simple operations on undirected and directed acyclic graphs.
ancestralSet Simple operations on undirected and directed acyclic graphs.
as.adjMAT Simple operations on undirected and directed acyclic graphs.
as.gmData Class "gmData" graphical meta data
as.ptable Representation of and operations on multidimensional tables

-- B --

breastcancer Gene expression signatures for p53 mutation status in 250 breast cancer samples

-- C --

cad1 Coronary artery disease data
cad2 Coronary artery disease data
carcass lean meat contents of pig carcasses
carcassall lean meat contents of pig carcasses
children Simple operations on undirected and directed acyclic graphs.
closure Simple operations on undirected and directed acyclic graphs.
colSumsPrim Utility functions for gRbase

-- D --

dag Create undirected and directed graphs
dagList Create undirected and directed graphs
dataOrigin Class "gmData" graphical meta data
description Class "gmData" graphical meta data
dietox Growth curves of pigs in a 3x3 factorial experiment

-- E --

edgeList Simple operations on undirected and directed acyclic graphs.
edgePairs Simple operations on undirected and directed acyclic graphs.

-- F --

fit Class "gRfit" - fitted graphical models
fit.hllm Hierarchical log-linear models
formula Class "gModel" - graphical models

-- G --

getFit Class "gRfit" - fitted graphical models
gmData Class "gModel" - graphical models
gModel Class "gModel" - graphical models
gModel-class Class "gModel" - graphical models
gRbase The package ‘gRbase’: summary information
gRfit Class "gRfit" - fitted graphical models

-- H --

hllm Hierarchical log-linear models
hllm-class Hierarchical log-linear models

-- I --

intersectPrim Utility functions for gRbase
is.complete Simple operations on undirected and directed acyclic graphs.
is.decomposition Simple operations on undirected and directed acyclic graphs.
is.simplicial Simple operations on undirected and directed acyclic graphs.

-- J --

jTree More advanced operations on undirected and directed acyclic graphs.

-- L --

latent Class "gmData" graphical meta data

-- M --

math Mathematics marks for students
mathmark Mathematics marks for students
MCS More advanced operations on undirected and directed acyclic graphs.
MCSMAT More advanced operations on undirected and directed acyclic graphs.
moralize More advanced operations on undirected and directed acyclic graphs.

-- N --

newDAG Create undirected and directed graphs
newDAGlist Create undirected and directed graphs
newgmData Class "gmData" graphical meta data
newUG Create undirected and directed graphs
newUGlist Create undirected and directed graphs
nLevels Class "gmData" graphical meta data
nLevels.array Representation of and operations on multidimensional tables
nLevels.gmData Class "gmData" graphical meta data
nLevels.ptable Representation of and operations on multidimensional tables
nominal Class "gmData" graphical meta data
nonEdgeList Simple operations on undirected and directed acyclic graphs.

-- O --

obs Class "gmData" graphical meta data
observations Class "gmData" graphical meta data
ordinal Class "gmData" graphical meta data
outerPrim Utility functions for gRbase

-- P --

parents Simple operations on undirected and directed acyclic graphs.
print.gmData Class "gmData" graphical meta data
print.gModel Class "gModel" - graphical models
print.gRfit Class "gRfit" - fitted graphical models
print.ptable Representation of and operations on multidimensional tables
print.ripOrder More advanced operations on undirected and directed acyclic graphs.
ptable Representation of and operations on multidimensional tables

-- Q --

querygraph Query a graph

-- R --

rats Weightloss of rats
reinis Risk factors for coronary heart disease.
removeRedundant Utility functions for gRbase
RIP More advanced operations on undirected and directed acyclic graphs.
RIPMAT More advanced operations on undirected and directed acyclic graphs.
rowSumsPrim Utility functions for gRbase

-- S --

setdiffPrim Utility functions for gRbase
shortNames Class "gmData" graphical meta data
simplicialNodes Simple operations on undirected and directed acyclic graphs.
stepwise.hllm Hierarchical log-linear models
subsetof Utility functions for gRbase
subsetofList Utility functions for gRbase
summary.gmData Class "gmData" graphical meta data
summary.gRfit Class "gRfit" - fitted graphical models

-- T --

tableMargin Compute table margin or table slice
tableMarginPrim Representation of and operations on multidimensional tables
tableOp Compute table margin or table slice
tablePerm Compute table margin or table slice
tableSlice Compute table margin or table slice
tableSlicePrim Compute table margin or table slice
triangulate Triangulation of an undirected graph

-- U --

ug Create undirected and directed graphs
ugList Create undirected and directed graphs
uniquePrim Utility functions for gRbase
unlistPrim Utility functions for gRbase

-- V --

validVarTypes Admissible variable types in gmData objects
valueLabels Class "gmData" graphical meta data
valueLabels.array Representation of and operations on multidimensional tables
valueLabels.gmData Class "gmData" graphical meta data
valueLabels.ptable Representation of and operations on multidimensional tables
varNames Class "gmData" graphical meta data
varNames.array Representation of and operations on multidimensional tables
varNames.gmData Class "gmData" graphical meta data
varNames.ptable Representation of and operations on multidimensional tables
varTypes Class "gmData" graphical meta data