Testing for monotonic relationship between gene expression and doses in a microarray experiment.

Documentation for package ‘IsoGene’ version 1.0-13

IsoGene-package	IsoGene
exampleData	Dose-response microarray example data
Isoallfdr	Obtaining the delta table in the SAM procedure
IsoBHPlot	Plot of adjusted p-values using BH or BY adjustment
Isofudge	Calculation of the fudge factor for the five SAM test statistics in the SAM procedure
IsoGene	IsoGene
IsoGene1	The five test statistics calculated for both the increasing and decreasing trends
IsoGenem	The five test statistics calculated for both the increasing and decreasing trends
IsoGenemSAM	The five SAM test statistics calculated for both the increasing and decreasing trends
IsoPlot	IsoPlot
IsopvaluePlot	Plot of p-values from permutations under increasing or decreasing alternatives
Isoqqstat	Implementation of five SAM test statistics in the SAM procedure
Isoqval	Obtaining the list of significant genes using the SAM procedure
IsoRawp	IsoRawp
IsoSAMPlot	Plots produced using the SAM procedure
IsoTestBH	Test of monotonic trends using the five test statistics with BH or BY adjustment
IsoTestSAM	Obtaining the list of significant genes using the SAM procedure