SubpathwayMiner-internal {SubpathwayMiner} | R Documentation |
These are functions internally called by other functions
in the package SubpathwayMiner
and not meant to be called by the user.
getAdjECID(ECID,top,direction) getNodes(top) getPathGraph(path,direction) getAllPathGraph(fileList,path,direction,verbose=TRUE) convertFile2List(file1,file2,sep="\t") convertFile2List1(file1,file2,sep="\t") getMerge(org="hsa",type1="enzyme",type2="ncbi-geneid", path="ftp://ftp.genome.jp/pub/kegg/genes/organisms") getMerge1(org="hsa",type1="pathway",type2="ncbi-geneid", path="ftp://ftp.genome.jp/pub/kegg/genes/organisms") buildBgGeneList(org="hsa",type2="ncbi-geneid", path="ftp://ftp.genome.jp/pub/kegg/genes/organisms") initialize() getKidFromOid(oid) getOidFromKid(kid) getkidoid(org,type2,path="ftp://ftp.genome.jp/pub/kegg/genes/organisms") getPathName(file="map_title.tab", path="ftp://ftp.genome.jp/pub/kegg/pathway/")
Chunquan Li <lcqbio@yahoo.com.cn>