gotoKEGG {SubpathwayMiner}R Documentation

Visualize pathways or sub-pathways through linking to the KEGG web site

Description

Visualize pathways or sub-pathways through linking to the KEGG web site.

Usage

    gotoKEGG(pathway,ann)

Arguments

pathway A character string of pathway identifier, e.g., "path:00010".
ann A list, e.g., the return value of the function getAnn.

Details

On these pictures, The red nodes represent the enzymes thats include the submitted genes. .

Author(s)

Chunquan Li <lcqbio@yahoo.com.cn>

See Also

plotAnn,getAnn,printAnn

Examples

##visualize pathways through linking to the KEGG web site.
library(Rgraphviz)
geneList<-getAexample(k=100)
ann<-getAnn(geneList)
#gotoKEGG("path:00010",ann)

##visualize sub-pathways of metabolic pathways through linking to the KEGG web site.
geneList<-getAexample(k=1000)
subGraphList<-getKcSubGraph(k=4)
ann<-getAnn(geneList,graphList=subGraphList)
#gotoKEGG("path:00010_1",ann)

[Package SubpathwayMiner version 1.1 Index]