gotoKEGG {SubpathwayMiner} | R Documentation |
Visualize pathways or sub-pathways through linking to the KEGG web site.
gotoKEGG(pathway,ann)
pathway |
A character string of pathway identifier, e.g., "path:00010". |
ann |
A list, e.g., the return value of the function getAnn . |
On these pictures, The red nodes represent the enzymes thats include the submitted genes. .
Chunquan Li <lcqbio@yahoo.com.cn>
##visualize pathways through linking to the KEGG web site. library(Rgraphviz) geneList<-getAexample(k=100) ann<-getAnn(geneList) #gotoKEGG("path:00010",ann) ##visualize sub-pathways of metabolic pathways through linking to the KEGG web site. geneList<-getAexample(k=1000) subGraphList<-getKcSubGraph(k=4) ann<-getAnn(geneList,graphList=subGraphList) #gotoKEGG("path:00010_1",ann)