sigma {gcExplorer}R Documentation

E. coli Sigma Factors and Global Regulators

Description

The E. coli sigma factors and the genes they regulate.

Usage

data(sigma)

Format

A data frame with 1851 observations on the following 6 variables.

SigmaFactor
a factor with levels Sigma19 Sigma24 Sigma28 Sigma32 Sigma38 Sigma54 Sigma70
SigmaGene
a factor with levels fecI fliA rpoD rpoDS rpoE rpoH rpoN rpoS
RegulatedGeneName
The genename of the regulated genes.
RegulatedGenebnumber
The Blattner numbers of the regulated genes.
function
a factor with levels +
GeneType
a factor with levels Phantom Gene Pseudo Gene

Source

http://regulondb.ccg.unam.mx/LicenseRegulonDBd.jsp

References

Salgado H, Gama-Castro S, Peralta-Gil M, Diaz-Peredo E, Sanchez-Solano F, Santos-Zavaleta A, Martinez-Flores I, Jimenez-Jacinto V, Bonavides-Martinez C, Segura-Salazar J, Martinez-Antonio A, Collado-Vides J. RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions Nucleic Acids Res. 2006 Jan 1;34(Database issue):D394-7

Examples

data(sigma)
data(reg)

[Package gcExplorer version 0.9-1 Index]