QTL directed graphs


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Documentation for package ‘qdg’ version 1.0.0

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QDG-package Implements the QDG algorithm
acyclic Acyclic graph example
compute.mu Utilities for internal use with qdg library
cyclica Cyclic graph (a) example
cyclicb Cyclic graph (b) example
cyclicc Cyclic graph (c) example
generate.data Generate graph data for examples
generate.data.graph.a Generate graph data for examples
generate.data.graph.b Generate graph data for examples
generate.data.graph.c Generate graph data for examples
glxnet Generate and graph Glx network
plot.qdg Plot a directed graph
print.qdg.perm.test Conduct permutation test for LOD score of edge direction on directed graph
print.qdgAlgo Produces a directed graph using QDG algorithm
print.qdgSEM Score directed graphs outputed by qdgAlgo using structural equation models (SEM)
produce.qtl.sample Generate graph data for examples
QDG Implements the QDG algorithm
qdg.perm.test Conduct permutation test for LOD score of edge direction on directed graph
qdgAlgo Produces a directed graph using QDG algorithm
qdgSEM Score directed graphs outputed by qdgAlgo using structural equation models (SEM)
summary.qdg.perm.test Conduct permutation test for LOD score of edge direction on directed graph
summary.qdgAlgo Produces a directed graph using QDG algorithm
summary.qdgSEM Score directed graphs outputed by qdgAlgo using structural equation models (SEM)