FunctSNP-package {FunctSNP} | R Documentation |
This package provides functions to query species-specific annotation databases. The main use of the package is to associate SNPs to functional information. Functions are also provided to build local databases from public repositories. Pre-built databases can be downloaded using the function downloadDB.
Package: | FunctSNP |
Type: | Package |
Version: | 1.0-1 |
Date: | 2009-09-10 |
License: | GPL-3 |
LazyLoad: | yes |
A quick start to FunctSNP: 1. Load FunctSNP: library (FunctSNP) 2. Download a SNP database if it is not in the library already(e.g. for Bos taurus - species code = bta) : downloadDB("bta") 3. Set the default species, e.g. for Bos taurus: setSpecies("bta") 4. Retrieve information for all bovine genes: allgenes <- getGenes()
S. J. Goodswen with contributions from N. S. Watson-Haigh, H. N. Kadarmideen and C. Gondro
Maintainer: S. J. Goodswen <Stephen.Goodswen@csiro.au>
addSpecies
downloadDB
getGenes
getGeneID
getGenesByDist
getGO
getHighScoreSNP
getHomolo
getKEGG
getNearGenes
getOMIA
getProteins
getSNPID
getSNPs
getTraits
installedDBs
makeDB
setSpecies
supportedSpecies
userAddedSpecies