Testing for monotonic relationship between gene expression and doses in a microarray experiment.

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Documentation for package ‘IsoGene’ version 1.0-15

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IsoGene-package IsoGene
dopamine Dose-response microarray example data
exampleData Dose-response microarray example data
Isoallfdr Obtaining the delta table in the SAM procedure
IsoBHPlot Plot of adjusted p-values using BH or BY adjustment
Isofudge Calculation of the fudge factor for the five SAM test statistics in the SAM procedure
IsoGene IsoGene
IsoGene1 The five test statistics calculated for both the increasing and decreasing trends
IsoGenem The five test statistics calculated for both the increasing and decreasing trends
IsoGenemSAM The five SAM test statistics calculated for both the increasing and decreasing trends
IsoPlot IsoPlot
IsopvaluePlot Plot of p-values from permutations under increasing or decreasing alternatives
Isoqqstat Implementation of five SAM test statistics in the SAM procedure
Isoqval Obtaining the list of significant genes using the SAM procedure
IsoRawp IsoRawp
IsoSAMPlot Plots produced using the SAM procedure
IsoTestBH Test of monotonic trends using the five test statistics with BH or BY adjustment
IsoTestSAM Obtaining the list of significant genes using the SAM procedure