rppa2boxplot {RPPanalyzer} | R Documentation |
Draws boxplots of groups of an RPPA data set and compares the expression values to a reference group.
rppa2boxplot(x, param = "tissue", wilcoxtest = FALSE, control = "normal", file = "boxplot_groups.pdf")
x |
List with RPPA data with aggregated replicate spots |
param |
character describing the phenodata that should be analyzed |
wilcoxtest |
logical. If true, a wilcoxon test is performed on the groups found in param . |
control |
Character describing the sample group of param that serves as reference in the wilcoxon test. |
file |
Title of the file that will be exported. |
Generates a PDF file
Heiko Mannsperger <h.mannsperger@dkfz.de>
library(RPPanalyzer) data(dataIII) dataIII_median <- sample.median(dataIII) rppa2boxplot(dataIII_median,param="rank",control="vx",wilcoxtest=TRUE)