SigWinR-package {SigWinR}R Documentation

calculate and display significant windows and ridgeograms

Description

R implemenation of SigWin-detector developed be Marcia A Inda.

Details

Package: SigWinR
Type: Package
Version: 1.0
Date: 2009-02-04
License: GPL

Author(s)

Wim de Leeuw <w.c.deleeuw@uva.nl>

References

Details can be found in: SigWin-detector: a Grid-enabled workflow for discovering enriched windows of genomic features related to DNA sequences Marcia A Inda, Marinus F van Batenburg, Marco Roos, Adam SZ Belloum, Dmitry Vasunin, Adianto Wibisono, Antoine HC van Kampen, and Timo M Breit BMC Research Notes 2008; 1:63

See Also

RidgeogramPlot,Ridgeogram,SigWin

Examples

lseq <- c(rnorm(200),rnorm(100,-1),rnorm(50),rnorm(50,4.0),rnorm(100))
ridgeogram <- Ridgeogram(lseq)
RidgeogramPlot(ridgeogram,0.05,"Example ridgeogram",
        high.col="green",low.col="red")

[Package SigWinR version 1.0.1 Index]