RidgeogramPlot {SigWinR}R Documentation

Plot a RIDGEOGRAM

Description

Basic RIDGEOGRAM plotter.

Usage

RidgeogramPlot(ridgeogram, pval=0.05, ptitle = "Ridgeogram", high.col = "red", low.col = "blue")

Arguments

ridgeogram ridgeogram to plot. If not given it will be calculated
pval the highes p-value given a color in the graph
ptitle title of the graph
high.col color used to show positive significant windows
low.col color used to show negative significant windows

Details

In the plot the ridgeogram is plotted along with the sequence used as input of the graph.

Author(s)

w.c.deleeuw@uva.nl

References

SigWin-detector: a Grid-enabled workflow for discovering enriched windows of genomic features related to DNA sequences Marcia A Inda, Marinus F van Batenburg, Marco Roos, Adam SZ Belloum, Dmitry Vasunin, Adianto Wibisono, Antoine HC van Kampen, and Timo M Breit BMC Research Notes 2008; 1:63

See Also

Ridgeogram()

Examples

RidgeogramPlot(Ridgeogram(0.5*rnorm(124)+cos(seq(0.1,12.4,by=0.1))));
lseq <- c(rnorm(200),rnorm(100,-1),rnorm(50),rnorm(50,4.0),rnorm(100))
rg <- Ridgeogram(lseq)
RidgeogramPlot(rg,0.05,"Example ridgeogram",high.col="green",low.col="red")

[Package SigWinR version 1.0.1 Index]