ape-defunct {ape} | R Documentation |
These functions have been removed from ape or moved to another package.
klastorin(phy) mlphylo(x, phy, model = DNAmodel(), search.tree = FALSE, quiet = FALSE, value = NULL, fixed = FALSE) DNAmodel(model = "K80", partition = 1, ncat.isv = 1, invar = FALSE, equal.isv = TRUE, equal.invar = 1) sh.test(..., x, model = DNAmodel(), B = 100) heterozygosity(x, variance = FALSE) H(x, variance = FALSE) nuc.div(x, variance = FALSE, pairwise.deletion = FALSE) theta.h(x, standard.error = FALSE) theta.k(x, n = NULL, k = NULL) theta.s(s, n, variance = FALSE)
klastorin
has been removed because it does not seem to be used
and this helped to clear some internal C code (this function may be
put back with a different coding).
mlphylo
, DNAmodel
and sh.test
have been removed:
see the package phangorn for a much better implementation of
these methods (and others).
heterozygosity
, nuc.div
, theta.h
, theta.k
and theta.s
have been moved to pegas.