SegmentedAlleleBFractions {aroma.core}R Documentation

The SegmentedAlleleBFractions class

Description

Package: aroma.core
Class SegmentedAlleleBFractions

Object
~~|
~~+--RawGenomicSignals
~~~~~~~|
~~~~~~~+--RawAlleleBFractions
~~~~~~~~~~~~|
~~~~~~~~~~~~+--SegmentedGenomicSignalsInterface
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--SegmentedAlleleBFractions

Directly known subclasses:

public static class SegmentedAlleleBFractions
extends SegmentedGenomicSignalsInterface

Usage

SegmentedAlleleBFractions(..., states=NULL)

Arguments

... Arguments passed to RawAlleleBFractions.
states A function returning the copy-number states given a vector of locus positions.

Fields and Methods

Methods:
No methods defined.

Methods inherited from SegmentedGenomicSignalsInterface:
as.data.frame, binnedSmoothingByState, extractSubsetByState, getStateColorMap, getStateColors, getStates, getUniqueStates, kernelSmoothingByState, plot, points, setStateColorMap, setStates

Methods inherited from RawAlleleBFractions:
extractRawMirroredAlleleBFractions, plot

Methods inherited from RawGenomicSignals:
addBy, addLocusFields, append, applyBinaryOperator, as.data.frame, binnedSmoothing, divideBy, estimateStandardDeviation, extractDataForSegmentation, extractRegion, extractSubset, gaussianSmoothing, getChromosome, getLocusFields, getName, getPositions, getSigma, getSignals, getWeights, getXScale, getXY, getYScale, hasWeights, kernelSmoothing, lines, multiplyBy, nbrOfLoci, plot, points, setLocusFields, setName, setSigma, setWeights, setXScale, setYScale, signalRange, sort, subtractBy, summary, xMax, xMin, xRange, xSeq, yMax, yMin, yRange

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)


[Package aroma.core version 1.4.0 Index]