AromaTabularBinaryFile {aroma.core} | R Documentation |
Package: aroma.core
Class AromaTabularBinaryFile
Object
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FullNameInterface
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GenericDataFile
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GenericTabularFile
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AromaTabularBinaryFile
Directly known subclasses:
AromaCellPositionFile, AromaCellSequenceFile, AromaCellTabularBinaryFile, AromaMicroarrayTabularBinaryFile, AromaUflFile, AromaUgpFile, AromaUnitCallFile, AromaUnitChromosomeTabularBinaryFile, AromaUnitFracBCnBinaryFile, AromaUnitGenotypeCallFile, AromaUnitSignalBinaryFile, AromaUnitTabularBinaryFile, AromaUnitTotalCnBinaryFile, AromaUnitTypesFile
public abstract static class AromaTabularBinaryFile
extends GenericTabularFile
A AromaTabularBinaryFile represents a file with a binary format. It has a well defined header, a data section, and a footer.
AromaTabularBinaryFile(...)
... |
Arguments passed to GenericTabularFile . |
Methods:
[ | - | |
[[ | - | |
[<- | - | |
allocate | Creates an AromaTabularBinaryFile. | |
as.character | - | |
colMeans | - | |
colMedians | - | |
colStats | - | |
colSums | - | |
dimnames<- | - | |
getBytesPerColumn | - | |
getColClasses | - | |
getColumnNames | - | |
importFrom | - | |
lapply | - | |
nbrOfColumns | - | |
nbrOfRows | - | |
readColumns | - | |
readFooter | Reads the file footer in XML format into a named nested list. | |
subset | - | |
summary | - | |
writeFooter | Writes a named nested list to the file footer in XML format. |
Methods inherited from GenericTabularFile:
as.character, dim, extractMatrix, getColumnNames, getColumnNameTranslator, nbrOfColumns, nbrOfRows, readColumns, readDataFrame, setColumnNameTranslator, translateColumnNames
Methods inherited from GenericDataFile:
compareChecksum, copyTo, equals, fromFile, getAlias, getAttribute, getAttributes, getChecksum, getCreatedOn, getDefaultFullName, getExtension, getExtensionPattern, getFilename, getFilenameExtension, getFileSize, getFileType, getLastAccessedOn, getLastModifiedOn, getOutputExtension, getPath, getPathname, gunzip, gzip, hasBeenModified, isFile, readChecksum, renameTo, renameToUpperCaseExt, setAlias, setAttribute, setAttributes, setAttributesBy, setAttributesByTags, setExtensionPattern, testAttributes, validateChecksum, writeChecksum
Methods inherited from FullNameInterface:
appendFullNameTranslator, appendFullNameTranslatorBycharacter, appendFullNameTranslatorByfunction, appendFullNameTranslatorBylist, appendFullNameTranslatorByNULL, clearFullNameTranslator, clearListOfFullNameTranslators, getDefaultFullName, getFullName, getFullNameTranslator, getListOfFullNameTranslators, getName, getTags, hasTag, hasTags, setFullName, setFullNameTranslator, setListOfFullNameTranslators, setName, setTags, updateFullName
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)