SegmentedAlleleBFractions {aroma.core} | R Documentation |
Package: aroma.core
Class SegmentedAlleleBFractions
Object
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RawGenomicSignals
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RawAlleleBFractions
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SegmentedGenomicSignalsInterface
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SegmentedAlleleBFractions
Directly known subclasses:
public static class SegmentedAlleleBFractions
extends SegmentedGenomicSignalsInterface
SegmentedAlleleBFractions(..., states=NULL)
... |
Arguments passed to RawAlleleBFractions . |
states |
A function returning the copy-number states given a
vector of locus positions. |
Methods:
No methods defined.
Methods inherited from SegmentedGenomicSignalsInterface:
as.data.frame, binnedSmoothingByState, extractSubsetByState, getStateColorMap, getStateColors, getStates, getUniqueStates, kernelSmoothingByState, plot, points, setStateColorMap, setStates
Methods inherited from RawAlleleBFractions:
extractRawMirroredAlleleBFractions, plot
Methods inherited from RawGenomicSignals:
addBy, addLocusFields, append, applyBinaryOperator, as.data.frame, binnedSmoothing, divideBy, estimateStandardDeviation, extractDataForSegmentation, extractRegion, extractSubset, gaussianSmoothing, getChromosome, getLocusFields, getName, getPositions, getSigma, getSignals, getWeights, getXScale, getXY, getYScale, hasWeights, kernelSmoothing, lines, multiplyBy, nbrOfLoci, plot, points, setLocusFields, setName, setSigma, setWeights, setXScale, setYScale, signalRange, sort, subtractBy, summary, xMax, xMin, xRange, xSeq, yMax, yMin, yRange
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)