RawGenomicSignals {aroma.core} | R Documentation |
Package: aroma.core
Class RawGenomicSignals
Object
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RawGenomicSignals
Directly known subclasses:
RawAlleleBFractions, RawCopyNumbers, RawMirroredAlleleBFractions, RawSequenceReads, SegmentedAlleleBFractions, SegmentedCopyNumbers
public static class RawGenomicSignals
extends Object
RawGenomicSignals(y=NULL, x=NULL, w=NULL, chromosome=NA, name=NULL, ...)
y |
A numeric vector of length J specifying the signal
at each locus. |
x |
A (optional) numeric vector of length J specifying the
position of each locus. |
w |
A (optional) non-negative numeric vector of length J
specifying a weight of each locus. |
chromosome |
An (optional) integer specifying the chromosome for
these genomic signals. |
name |
An (optional) character string specifying the sample name. |
... |
Not used. |
Methods:
addBy | - | |
addLocusFields | - | |
append | - | |
as.data.frame | - | |
binnedSmoothing | - | |
divideBy | - | |
estimateStandardDeviation | Estimates the standard deviation of the raw Ys. | |
extractRegion | - | |
extractSubset | - | |
gaussianSmoothing | - | |
getChromosome | - | |
getLocusFields | - | |
getName | - | |
getPositions | - | |
getSigma | - | |
getSignals | - | |
getWeights | - | |
getXScale | - | |
getXY | - | |
getYScale | - | |
hasWeights | - | |
kernelSmoothing | - | |
lines | - | |
multiplyBy | - | |
nbrOfLoci | - | |
plot | - | |
points | - | |
setLocusFields | - | |
setName | - | |
setSigma | - | |
setWeights | - | |
setXScale | - | |
setYScale | - | |
signalRange | - | |
sort | - | |
subtractBy | - | |
summary | - | |
xMax | - | |
xMin | - | |
xRange | - | |
xSeq | - | |
yMax | - | |
yMin | - | |
yRange | - |
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)