AromaUnitTotalCnBinarySet {aroma.core}R Documentation

The AromaUnitTotalCnBinarySet class

Description

Package: aroma.core
Class AromaUnitTotalCnBinarySet

Object
~~|
~~+--FullNameInterface
~~~~~~~|
~~~~~~~+--GenericDataFileSet
~~~~~~~~~~~~|
~~~~~~~~~~~~+--GenericTabularFileSet
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--AromaTabularBinarySet
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--AromaUnitSignalBinarySet
~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~+--CopyNumberDataSet
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~+--AromaUnitTotalCnBinarySet

Directly known subclasses:

public static class AromaUnitTotalCnBinarySet
extends CopyNumberDataSet

An AromaUnitTotalCnBinarySet object represents a set of AromaUnitTotalCnBinaryFiles with identical chip types.

Usage

AromaUnitTotalCnBinarySet(...)

Arguments

... Arguments passed to AromaUnitSignalBinarySet.

Fields and Methods

Methods:
as.AromaUnitTotalCnBinarySetTuple -
as.CopyNumberDataSetTuple -
byName -
exportTotalCnRatioSet -
getAverageFile -
getUnitNamesFile -
nbrOfArrays -

Methods inherited from CopyNumberDataSet:
as, as.CopyNumberDataSet, hasAlleleBFractions, hasStrandiness

Methods inherited from AromaUnitSignalBinarySet:
byName, findByName, getAromaUgpFile, getChipType, getPlatform, validate

Methods inherited from GenericTabularFileSet:
calculateAverageColumnAcrossFiles, extractMatrix

Methods inherited from GenericDataFileSet:
append, appendFiles, appendFullNamesTranslator, appendFullNamesTranslatorByfunction, appendFullNamesTranslatorBylist, appendFullNamesTranslatorByNULL, as.list, byName, byPath, clearCache, clearFullNamesTranslator, copyTo, equals, extract, findByName, fromFiles, getAlias, getDefaultFullName, getFile, getFileClass, getFileSize, getFullNames, getNames, getPath, getPathnames, hasFile, indexOf, lapply, nbrOfFiles, sapply, seq, setAlias, setFullNamesTranslator, update2, updateFullName, updateFullNames, validate

Methods inherited from FullNameInterface:
appendFullNameTranslator, appendFullNameTranslatorBycharacter, appendFullNameTranslatorByfunction, appendFullNameTranslatorBylist, appendFullNameTranslatorByNULL, clearFullNameTranslator, clearListOfFullNameTranslators, getDefaultFullName, getFullName, getFullNameTranslator, getListOfFullNameTranslators, getName, getTags, hasTag, hasTags, setFullName, setFullNameTranslator, setListOfFullNameTranslators, setName, setTags, updateFullName

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)


[Package aroma.core version 1.4.0 Index]