AromaCellTabularBinaryFile {aroma.core}R Documentation

The AromaCellTabularBinaryFile class

Description

Package: aroma.core
Class AromaCellTabularBinaryFile

Object
~~|
~~+--FullNameInterface
~~~~~~~|
~~~~~~~+--GenericDataFile
~~~~~~~~~~~~|
~~~~~~~~~~~~+--GenericTabularFile
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--AromaTabularBinaryFile
~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~+--AromaPlatformInterface
~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~+--AromaMicroarrayTabularBinaryFile
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~+--AromaCellTabularBinaryFile

Directly known subclasses:
AromaCellPositionFile, AromaCellSequenceFile

public abstract static class AromaCellTabularBinaryFile
extends AromaMicroarrayTabularBinaryFile

A AromaCellTabularBinaryFile is an AromaTabularBinaryFile with the constraint that the rows map one-to-one to the cells (features) of a microarray.

Usage

AromaCellTabularBinaryFile(...)

Arguments

... Arguments passed to AromaTabularBinaryFile.

Fields and Methods

Methods:
nbrOfCells -

Methods inherited from AromaMicroarrayTabularBinaryFile:
allocate, as.character, byChipType, findByChipType, getChipType, getFilenameExtension, getPlatform

Methods inherited from AromaPlatformInterface:
getAromaPlatform, getPlatform, getUnitAnnotationDataFile, getUnitNamesFile, getUnitTypesFile

Methods inherited from AromaTabularBinaryFile:
[, [[, [<-, allocate, as.character, colMeans, colMedians, colStats, colSums, dimnames<-, getBytesPerColumn, getColClasses, getColumnNames, importFrom, lapply, nbrOfColumns, nbrOfRows, readColumns, readDataFrame, readFooter, readHeader, readRawFooter, setAttributesByTags, subset, summary, updateData, updateDataColumn, writeFooter, writeRawFooter

Methods inherited from GenericTabularFile:
as.character, dim, extractMatrix, getColumnNames, getColumnNameTranslator, nbrOfColumns, nbrOfRows, readColumns, readDataFrame, setColumnNameTranslator, translateColumnNames

Methods inherited from GenericDataFile:
compareChecksum, copyTo, equals, fromFile, getAlias, getAttribute, getAttributes, getChecksum, getCreatedOn, getDefaultFullName, getExtension, getExtensionPattern, getFilename, getFilenameExtension, getFileSize, getFileType, getLastAccessedOn, getLastModifiedOn, getOutputExtension, getPath, getPathname, gunzip, gzip, hasBeenModified, isFile, readChecksum, renameTo, renameToUpperCaseExt, setAlias, setAttribute, setAttributes, setAttributesBy, setAttributesByTags, setExtensionPattern, testAttributes, validateChecksum, writeChecksum

Methods inherited from FullNameInterface:
appendFullNameTranslator, appendFullNameTranslatorBycharacter, appendFullNameTranslatorByfunction, appendFullNameTranslatorBylist, appendFullNameTranslatorByNULL, clearFullNameTranslator, clearListOfFullNameTranslators, getDefaultFullName, getFullName, getFullNameTranslator, getListOfFullNameTranslators, getName, getTags, hasTag, hasTags, setFullName, setFullNameTranslator, setListOfFullNameTranslators, setName, setTags, updateFullName

Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

Author(s)

Henrik Bengtsson (http://www.braju.com/R/)

See Also

AromaUnitTabularBinaryFile.


[Package aroma.core version 1.4.0 Index]