RawCopyNumberModel {aroma.core} | R Documentation |
Package: aroma.core
Class RawCopyNumberModel
Object
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ChromosomalModel
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CopyNumberChromosomalModel
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RawCopyNumberModel
Directly known subclasses:
public abstract static class RawCopyNumberModel
extends CopyNumberChromosomalModel
This class represents an identity copy-number model which returns the input as is.
RawCopyNumberModel(...)
... |
Passed to the constructor of the superclass. |
Methods:
getAsteriskTags | - | |
getSetTag | - |
Methods inherited from CopyNumberChromosomalModel:
as.character, calculateChromosomeStatistics, calculateRatios, clearCache, estimateSds, extractRawCopyNumbers, fit, getDataFileMatrix, getNames, getPairedNames, getReferenceSetTuple, getRefSetTuple, isPaired, newPlot, plotAxesLayers, plotChromosomesLayers, plotCytobandLayers, plotFitLayers, plotGridHorizontalLayers, plotRawCopyNumbers, plotSampleLayers
Methods inherited from ChromosomalModel:
as.character, clearCache, fit, getAlias, getAsteriskTags, getChipType, getChipTypes, getChromosomes, getFullName, getFullNames, getGenome, getGenomeData, getGenomeFile, getListOfAromaUgpFiles, getName, getNames, getParentPath, getPath, getReportPath, getRootPath, getSets, getSetTuple, getTags, indexOf, nbrOfArrays, nbrOfChipTypes, setAlias, setGenome
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save
Henrik Bengtsson (http://www.braju.com/R/)