dcemri-package {dcemri} | R Documentation |
A collection of routines and documentation that allows one to perform a quantitative analysis of dynamic contrast-enhanced or diffusion-weighted MRI data. Medical imaging data should be organized using either the Analyze or NIfTI data formats.
Package: | dcemri |
Version: | 0.1.4 |
Date: | 2009-08-25 |
Depends: | R (>= 2.6.0), graphics, grDevices |
Suggests: | bitops, minpack.lm, multicore, splines |
License: | BSD |
URL: | http://www.dcemri.org/, http://dcemri.sourceforge.net/ |
Packaged: | 2009-08-25 15:14:01 UTC; bjw34032 |
Index:
R10.lm Estimate Intrinsic Tissue Relaxivity adc.lm Estimate the Apparent Diffusion Coefficient (ADC) aif.orton.exp Arterial Input Functions buckley Simulated Data from Buckley (2002) conv.fft Convolution of 3D Arrays using the Fourier Transform dam Double-Angle Method for B1+ Mapping dcemri.bayes Bayesian Methods for Pharmacokinetic Modeling of Dynamic Contrast-Enhanced MRI Data dcemri.lm Pharmacokinetic Models for Dynamic Contrast-Enhanced MRI Data dcemri.map Pharmacokinetic Modeling of Dynamic Contrast-Enhanced MRI Data dcemri.spline Bayesian P-Splines for Dynamic Contrast- Enhanced MRI Data extract.aif Seed Growing for a 4D Array find.center Find the Center of a Binary Mask ftm Fast Template Matching via Cross-Correlation hotmetal Hot Metal Color Table kineticModel Pharmacokinetic Models nsli Dimension Accessor Functions read.analyze.hdr Read Analyze Format Headers and Binary Image Files read.hdr Read Headers and Binary Image Files for Medical Imaging Data read.nifti.hdr Read NIfTI Format Headers and Image Files shift3D Shift a 3D Array in One Dimension tim.colors Tim's Useful Color Table write.analyze.img Write Analyze/NIfTI Format Binary Image Files
Further information is available in the following vignettes:
dcemri | dcemri(source, pdf) |
Brandon Whitcher <bjw34032@users.sourceforge.net>
Volker Schmid <volkerschmid@users.sourceforge.net>
Andrew Thornton <zeripath@users.sourceforge.net>
Maintainer: Brandon Whitcher <bjw34032@users.sourceforge.net>
Schmid, V., Whitcher, B., Padhani, A.R., Taylor, N.J. and Yang, G.-Z. (2006) Bayesian methods for pharmacokinetic models in dynamic contrast-enhanced magnetic resonance imaging, IEEE Transactions on Medical Imaging, 25 (12), 1627-1636.
Schmid, V., Whitcher, B., Padhani, A.R. and G.-Z. Yang (2009) A semi-parametric technique for the quantitative analysis of dynamic contrast-enhanced MR images based on Bayesian P-splines, IEEE Transactions on Medical Imaging, 28 (6), 789-798.
## Not run: demo(avg152T1) demo(avg152T1_LR) demo(avg152T1_RL) demo(buckley) demo(filtered_func_data) demo(zstat1) ## End(Not run)