clusterPlot {gcExplorer}R Documentation

Cluster solution plot

Description

Plot the expression profiles of the smallest clusters of an object of class "kccasimple".

Usage

## S4 method for signature 'kccasimple':
clusterPlot(object, method = c("size", "tight"), layout = c(3, 4), xlabels = NULL, xlab = "time", ...)

Arguments

object An object of class "kccasimple".
method Which clusters should be plotted: either small clusters or tight clusters.
layout A vector of the form c(nr, nc). Only a subset of nr x nc clusters will be drawn. The arrangement of nr rows and nc columns is passed to the layout argument of lattice function xyplot.
xlabels Either a numeric vector of time points giving the positions on the x-axis or a character vector with names of the positions on the x-axis.
xlab Character string or expression giving label for the x-axis
... Further arguments can be passed to function xyplot.

Author(s)

Theresa Scharl

Examples

data("hsod")
cl1 <- qtclust(hsod, radius = 2, save.data = TRUE)

clusterPlot(cl1, method = "tight",layout = c(3,2))


[Package gcExplorer version 0.9-1 Index]