gcProfile {gcExplorer}R Documentation

Plot for cluster results

Description

Plot a single cluster of a 'kccasimple' object.

Usage

## S4 method for signature 'kccasimple':
gcProfile(object, which, data = NULL, cexl = 0.8, xlab = "", 
   ylab = "M", ylim=c(-6,6), cex.axis=1, xlabels=NULL,
   opar = par(las=1, mar=c(5, 4, 2, 0.5) + 0.1), 
   data.type=c("time", "other"), legend=TRUE, ...)

Arguments

object an object of class "kccasimple"
data Plot either the data stored in object or external data.
which Number of the cluster.
cexl Point size of the legend.
xlab Label for the x-axis.
ylab Label for the y-axis.
ylim Range of the y-axis.
cex.axis Point size of x-axis.
xlabels Positions on the x-axis. Default is 1:ncol(data).
opar Graphical parameters.
data.type If the data come from arbitrary source (default) colnames of the data are used as xlabels if not stated otherwise using xlabels. If the data comes from a time course experiment x-values start at 0 and different time intervals are supported.
legend Logical. Should a legend be drawn?.
... Further arguments can be passed to matplot.

Author(s)

Theresa Scharl

Examples

data("hsod")
cl1 <- qtclust(hsod, radius=2, save.data=TRUE)

gcProfile(cl1, which=5)
gcProfile(cl1, which=5, xlabels=c(0,8,15,22,45,68,90,150,180),
          xlab="time after induction [min]",data.type="time")

[Package gcExplorer version 0.9-1 Index]