iGenomicViewer-package {iGenomicViewer}R Documentation

Wrapper Package to make Bioinformatics heatmaps utilizing sendplot

Description

This package creates interactive bioinformatics heatmaps across a genomic range. It allows for the ability to create interactive annotation tracks and an interactive statistical or descriptive plot along side the heatmap.

Author(s)

Lori A. Shepherd

References

Albertson, D.G., Pinkel, D. 2003 Genomic microarrays in human genetic disease and cancer. 12. Spec No 2: 142-152

Chari, R., Lockwood, W.W., Lam, W.L. 2006 Computational Methods for the Analysis of Array Comparative Genomic Hybridization. Cancer Informatics 2: 48-58

Eisen, M.B., Spellman, P.T., Brown, P.O., Botstein, D. 1998. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA. 95:14863-14868

Gaile, D.P., Shepherd, L.A., Sucheston, L., Bruno, A., Manly, K.F. 2009. sendplot: Took for sending interactive plots with tool-tip content. http://cran.r-project.org/

Hibbs, M.A., Dirksen, N.C., Li, K., Troyanskaya, O.G. 2005. Visualization methods for statistical analysis of microarray clusters. BMC Bioinformatics 6: 115

Yee Hwa Yang, Paquet, A., Dudoit, S. 2007. marray: Exploratory analysis for two-color spotted microarray data R package version 1.20.0 http://www.maths.usyd.edu.au/u/jeany/

Prasad, T.V., Ahson, S.I. 2006. Visualization of microarray gene expression data. Bioinformation 4: 141-145

Zorn, W 2007 JavaScript, DHTML Tooltips JavaScript Cross Browser Library http://www.walterzorn.com/tooltip/tooltip_e.htm

See Also

iGGV, iGGVtiled


[Package iGenomicViewer version 2.4.6 Index]