makeTiled {iGenomicViewer} | R Documentation |
This function makes a tiled image display plot from a tiled image display 'TIplot' object.
makeTiled(TIplot, smpDiv=TRUE, divCol="lightgrey")
TIplot |
tiled display image object, of the class 'TIplot' |
smpDiv |
Should vertical dividing lines be placed in between samples of plot |
divCol |
If smpDiv, the color of the dividing line |
This function take the TIplot object and creates a static tiled display image. All information for plotting is stored in the TIplot object. The user may choose to display lines separating samples. This and the color of the separation lines are controlled by smpDiv and divCol.
Generates a static tiled display plot
Lori A. Shepherd, Daniel P. Gaile
# load data objects library("iGenomicViewer") data(iGGVex) data(mapping.info) # create a subset range bacDX = 103:112 smplDX = 1:10 Z = mat[bacDX,smplDX] # make object TIplot = initTile(Z=Z, bacDX=bacDX, mapObj=mapping.info, H=3,zlims=c(-0.5,0.5), ylabels=paste("Spot",bacDX, sep=""), xlabels=paste("smp",smplDX, sep=""), xlab="Samples", ylab="SpotID", ttl="tiledImage", returnVl=TRUE, saveFlag=FALSE, saveName="TIplot.RData") # plot object # makeTiled(TIplot)