mapobj-class {iGenomicViewer} | R Documentation |
mapobj 'mapping object' class
Description
The mapping object contains all mapping information which includes but
is not limited to spotIDs, chromosome locations, and genomic
locations. The mapping object will also have a band.info object
associated with it in order to map spot.IDs to chromosome, arm, broad
and fine bands.
mapobj object structure
- band.info
- a band.info object. see
makeBandInfo
- mapping.info
- A data.frame of mapping information. The
information included depends on the mapping file used and the user
settins when creating the object with the mappingObj function. The
data.frame must have Spot.ID, Chrom, as well as one of the options
for genomic locations. see
mappingObj
for more details.
- links
- a data frame of web address information for the
mapping. It should have the same row dimensions as the mapping.info
data.frame.
- images
- a data frame of paths to images relating to the
mapping. It should have the same row dimensions as the mapping.info
data.frame.
Author(s)
Lori A. Shepherd
See Also
mappingObj
[Package
iGenomicViewer version 2.4.6
Index]