updateOffset {mseq}R Documentation

update offsets

Description

Update the offsets for Poisson linear model, that is, the logarithms of gene expression levels when we take sequencing preferences into account. Only for internal use. Not available to users.

Usage

updateOffset(data, pred_count, log_expr)

Arguments

data the data frame generated by expData.R
pred_count the counts fitted by Poisson linear model
log_expr The log expression levels (offsets) we had before this iteration.

Value

a numeric vector of the offsets


[Package mseq version 1.1 Index]