getPredCount {mseq}R Documentation

predicted counts

Description

Get the predicted counts given the predicted preferences.

Usage

getPredCount(data, pred_pref)

Arguments

data the data frame generated by expData.R
pred_pref the predicted preferences

Value

predicted counts, a numeric vector

Examples

 # read and expand the data
 data(g1_part) # for real data, please use read.csv, like g1 <- read.csv("g1.csv")
 data <- expData(g1_part, 2, 3) # In real datasets, surrounding sequences should be set longer.
 
 # train and predict by Poisson linear model
 train.data <- data[data$index < 6, ]
 test.data <- data[data$index >= 6, ]
 train.glm <- iterGlm(train.data)
 pred.pref <- exp(glmPred(train.glm, test.data))

 pred.count <- getPredCount(test.data, pred.pref)

[Package mseq version 1.1 Index]