A B C D E F I J L M N O P Q R S T U W
activeCases | Calculator for Multi-State Path Models |
activeCases,mspathCalculator-method | Calculator for Multi-State Path Models |
activeCases-method | Calculator for Multi-State Path Models |
activeCases<- | Calculator for Multi-State Path Models |
activeCases<-,mspathCalculator,numeric-method | Calculator for Multi-State Path Models |
activeCases<--methods | Calculator for Multi-State Path Models |
addResult | Add a Job Run's Results to the Analyzer |
addResult,runAnalyzer,runTime-method | Class "runTime" |
alldone | Distributed Calculation Shut-Down |
bitMask | Class "readingError" |
bitMask,readingError-method | Class "readingError" |
boolMask | Class "readingError" |
boolMask,readingError-method | Class "readingError" |
calculate | calculate |
calculate,mspathCalculator,ANY,ANY,ANY-method | calculate |
calculate,mspathDistributedCalculator,numeric,missing,missing-method | calculate |
calculate-methods | calculate |
checkpoint | Checkpointing and progress information |
coef,mspath-method | Results of a multi-state path calculation |
coef,mspathCoefficients-method | Class "mspathCoefficients" |
coef,mspathEstimatedCoefficients-method | mspathEstimatedCoefficients |
coef,mspathFull-method | Results of a multi-state path calculation |
coef,readingError-method | Class "readingError" |
cpuTime | Class "runTime" |
cpuTime,runTime-method | Class "runTime" |
deltamethod | The delta method |
done | Finished with a Calculator |
done,mspathCalculator-method | Finished with a Calculator |
done,mspathDistributedCalculator-method | Finished with a Calculator |
done-methods | Finished with a Calculator |
doTrials | Run trials until told to stop |
e2 | Allowed Misclassifications: e2 |
effort | Get measures of effort to perform a calculation |
effort,mspathCalculator-method | Get measures of effort to perform a calculation |
effort-methods | Get measures of effort to perform a calculation |
endTime | Class "runTime" |
endTime,runTime-method | Class "runTime" |
estimateWork | Estimate Amount of Work for Computations |
estimateWork,mspathCalculator-method | Estimate Amount of Work for Computations |
estimateWork-methods | Estimate Amount of Work for Computations |
expit | Inverse logit function |
fixedSchedule | fixedSchedule |
isAllFixed | Test for fixed objects |
isAllFixed,mspathCoefficients-method | Class "mspathCoefficients" |
isAllFixed,mspathEstimatedCoefficients-method | Test for fixed objects |
isAllFixed-methods | Test for fixed objects |
job | Class "runTime" |
job,runTime-method | Class "runTime" |
logit | Logit function |
master | Start Multi-State Path Model Distributed Calculations on Master Node |
matrixCoef | Class "mspathCoefficients" |
matrixCoef,mspath-method | Results of a multi-state path calculation |
matrixCoef,mspathCoefficients-method | Class "mspathCoefficients" |
matrixCoef-methods | Class "mspathCoefficients" |
MatrixExp | Matrix exponential |
mean,readingError-method | Class "readingError" |
minus2loglik | Retrieve Multi-State Path Model Likelihood |
minus2loglik,mspath-method | Results of a multi-state path calculation |
minus2loglik,mspathCalculator-method | Retrieve Multi-State Path Model Likelihood |
minus2loglik-methods | Retrieve Multi-State Path Model Likelihood |
mpirank | Class "runTime" |
mpirank,runTime-method | Class "runTime" |
mpirank<- | Class "runTime" |
mpirank<-,runTime,numeric-method | Class "runTime" |
mspath | Multi-state Path-Dependent Models |
mspath-class | Results of a multi-state path calculation |
mspath.subset | subset a dataset based on estimated work |
mspathAbstractCalculator-class | Calculator for Multi-State Path Models |
mspathCalculator | Constructors for mspathCalculator Objects |
mspathCalculator-class | Calculator for Multi-State Path Models |
mspathCalculatorFromArgs | Constructors for mspathCalculator Objects |
mspathCoefficients | Class "mspathCoefficients" |
mspathCoefficients-class | Class "mspathCoefficients" |
mspathDistributedCalculator | Constructors for mspathCalculator Objects |
mspathDistributedCalculator-class | Distributed Calculator for Multi-State Path Models |
mspathDistributedCalculatorFactory | Make a Constructor for mspathCalculator Objects |
mspathEstimatedCoefficients | mspathEstimatedCoefficients |
mspathEstimatedCoefficients-class | mspathEstimatedCoefficients |
mspathFull-class | Results of a multi-state path calculation |
nActiveCases | Calculator for Multi-State Path Models |
nActiveCases,mspathCalculator-method | Calculator for Multi-State Path Models |
nActiveCases-methods | Calculator for Multi-State Path Models |
nBadNodes | Results of a multi-state path calculation |
nBadNodes,mspath-method | Results of a multi-state path calculation |
nBadNodes,mspathCalculator-method | Calculator for Multi-State Path Models |
nBadNodes-methods | Results of a multi-state path calculation |
nCases | Results of a multi-state path calculation |
nCases,mspath-method | Results of a multi-state path calculation |
nCases,mspathCalculator-method | Calculator for Multi-State Path Models |
nCases-methods | Results of a multi-state path calculation |
newRun | Class to Analyze Runtimes |
newRun,runAnalyzer-method | Class to Analyze Runtimes |
nGoodNodes | Results of a multi-state path calculation |
nGoodNodes,mspath-method | Results of a multi-state path calculation |
nGoodNodes,mspathCalculator-method | Calculator for Multi-State Path Models |
nGoodNodes-methods | Results of a multi-state path calculation |
nGoodPathNodes | Results of a multi-state path calculation |
nGoodPathNodes,mspath-method | Results of a multi-state path calculation |
nGoodPathNodes,mspathCalculator-method | Calculator for Multi-State Path Models |
nGoodPathNodes-methods | Results of a multi-state path calculation |
nGoodPaths | Results of a multi-state path calculation |
nGoodPaths,mspath-method | Results of a multi-state path calculation |
nGoodPaths,mspathCalculator-method | Calculator for Multi-State Path Models |
nGoodPaths-methods | Results of a multi-state path calculation |
optimizeWork | Calculator for Multi-State Path Models |
optimizeWork,mspathCalculator,numeric,numeric-method | Calculator for Multi-State Path Models |
optimizeWork-methods | Calculator for Multi-State Path Models |
optresults | Results of a multi-state path calculation |
optresults,mspath-method | Results of a multi-state path calculation |
optresults-methods | Results of a multi-state path calculation |
optresults<- | Results of a multi-state path calculation |
optresults<-,mspath-method | Results of a multi-state path calculation |
optresults<--methods | Results of a multi-state path calculation |
params<- | Calculator for Multi-State Path Models |
params<-,mspathCalculator,numeric-method | Calculator for Multi-State Path Models |
params<-,mspathDistributedCalculator,numeric-method | Distributed Calculator for Multi-State Path Models |
params<--methods | Calculator for Multi-State Path Models |
print,mspath-method | Results of a multi-state path calculation |
print,mspathCoefficients-method | Class "mspathCoefficients" |
print,mspathEstimatedCoefficients-method | mspathEstimatedCoefficients |
print,mspathFull-method | Results of a multi-state path calculation |
printFooter | Results of a multi-state path calculation |
printFooter,mspath-method | Results of a multi-state path calculation |
printFooter-methods | Results of a multi-state path calculation |
q2 | Allowed Transitions: q2 |
readingError | Class "readingError" |
readingError-class | Class "readingError" |
remoteTime<- | Class "runTime" |
remoteTime<-,runTime,numeric-method | Class "runTime" |
results | Retrieve Results of Multi-State Path Calculation |
results,mspathCalculator-method | Retrieve Results of Multi-State Path Calculation |
results-methods | Retrieve Results of Multi-State Path Calculation |
runAnalyzer | Class to Analyze Runtimes |
runAnalyzer-class | Class to Analyze Runtimes |
runeverywhere | Top Level of Distributed Calculation for Multi-State Path Model |
runTime | runTime constructor |
runTime-class | Class "runTime" |
sd,mspath-method | Results of a multi-state path calculation |
sd,mspathCoefficients-method | Class "mspathCoefficients" |
sd,mspathEstimatedCoefficients-method | mspathEstimatedCoefficients |
sd,mspathFull-method | Results of a multi-state path calculation |
show,mspath-method | Results of a multi-state path calculation |
show,mspathCoefficients-method | Class "mspathCoefficients" |
show,mspathEstimatedCoefficients-method | mspathEstimatedCoefficients |
sim1 | HCV Progression after liver transplant |
sim2 | HCV Progression after liver transplant |
sim3 | HCV Progression after liver transplant |
simulateObservations | Calculator for Multi-State Path Models |
simulateObservations,mspathCalculator-method | Calculator for Multi-State Path Models |
simulateObservations-methods | Calculator for Multi-State Path Models |
slave | Prepare for Distributed Multi-State Path Model Computations on Slaves |
smoosh | Analyze Runtime Estimates and Actual Values |
smoosh,runAnalyzer-method | Class to Analyze Runtimes |
startTime | Class "runTime" |
startTime,runTime-method | Class "runTime" |
trial | Class "trial" |
trial-class | Class "trial" |
useActualTimes | Calculator for Multi-State Path Models |
useActualTimes,mspathCalculator,numeric-method | Calculator for Multi-State Path Models |
useActualTimes-methods | Calculator for Multi-State Path Models |
waitTime | Class "runTime" |
waitTime,runTime-method | Class "runTime" |
wallTime | Class "runTime" |
wallTime,runTime-method | Class "runTime" |