treedist {phangorn} | R Documentation |
treedist
computes different tree distance methods and RF.dist
the Robinson-Foulds distance.
treedist(tree1, tree2) RF.dist(tree1, tree2, check.labels=TRUE)
tree1 |
A phylogenetic tree. |
tree2 |
A phylogenetic tree. |
check.labels |
compares labels of the trees. |
treedist
returns a vector containing the following tree distance methods
symmetric.difference |
symmetric.difference or Robinson-Foulds distance |
branch.score.difference |
branch.score.difference |
path.difference |
path.difference |
weighted.path.difference |
weighted.path.difference |
Klaus P. Schliep klaus.schliep@gmail.com
Steel M. A. and Penny P. (1993) Distributions of tree comparison metrics - some new results, Syst. Biol.,42(2), 126-141