genetree.vector {phybase} | R Documentation |
This function constructs gene tree vectors from gene trees across loci. The gene tree vectors can be used to construct maximum tree by the function maxtree
.
genetree.vector(filenames,outputfile)
filenames |
the gene tree files |
outputfile |
the output file |
The function returns a matrix of gene trees. Each row represents a gene tree vector. The gene tree vector consists of trees from multiple gene tree files.
Liang Liu lliu@oeb.harvard.edu
Liu, L. and D.K. Pearl. Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. Systematic Biology, 2007, 56:504-514.
Edwards, S.V., L. Liu., and D.K. Pearl. High resolution species trees without concatenation. PNAS, 2007, 104:5936-5941.