phylo4d-class {phylobase} | R Documentation |
S4 class for phylogenetic tree and data.
Objects can be created from various trees and a data.frame using the
constructor phylo4d
, or using new("phylo4d", ...)
for
empty objects.
edge
:edge.label
:edge.length
:label
:data
:order
:phylo4_orderings
, currently "unknown", "preorder"
(="cladewise" in ape
), and "postorder", with "cladewise"
and "pruningwise" also allowed for compatibility with ape
)annote
:metadata
:Ben Bolker, Thibaut Jombart
coerce-methods
for translation functions. The
phylo4d
constructor and the formatData
function to check the validity of trees and data. See also the
phylo4
constructor, the phylo4 class,
and the checkPhylo4
function to check the validity of
phylo4
trees.
library(ape) example(read.tree) obj <- phylo4d(as(tree.owls.bis,"phylo4"), data.frame(wing=1:3)) obj names(obj) summary(obj)