simAutoMarkers {polySegratio}R Documentation

S3 class simAutoMarkers

Description

An S3 class which contains the simulated dominant marker data for autopolyploids and other data of interest such as segregation proportions as well as parameters set for the generating

Value

markers matrix of 0,1 dominant markers with individuals as cols and rows as markers
E.segRatio expected segregation porportions, list with components ratio: segregation proportions, ploidy.level: level of ploidy 4,6,8, ..., ploidy.name: tetraploid, ... , unknown
ploidy.level the number of homologous chromosomes, either as numeric (single value) or as a character string containing type tetraploid, hexaploid, octoploid, ...
n.markers number of markers (Default: 500)
n.individuals number of individuals in the cross (Default: 200)
dose.proportion the proportion of markers to be simulated in each dosage class. Note that the exact number will be randomly generated from the multinomial distribution
true.doses list containing
    dosage
    doses generated for each marker for simulation
    table.dosages
    summary of no.s in each dosage
    names
    names for each dosage such as (SD) single dose, (DD) double dose, SDxSD etc
seg.ratios segregation proportions as class segRatio
time.generated date and time data set generated
call function call used to generate data set

Author(s)

Peter Baker p.baker1@uq.edu.au

See Also

expected.segRatio, segRatio, print.simAutoMarkers, plot.simAutoMarkers


[Package polySegratio version 0.2-3 Index]