simAutoCross {polySegratio}R Documentation

S3 class simAutoCross

Description

An S3 class which contains simulated dominant marker data for autopolyploids and other data of interest such as segregation proportions as well as parameters set for the generating given parents with ‘01’, ‘10’ and ‘11’ markers

Value

markers matrix of 0,1 dominant markers with individuals as cols and rows as markers
true.dosage true doses for each marker
name.true.dose names of true doses for each marker
p10 object of class simAutoMarkers for parental type ‘10’
p01 object of class simAutoMarkers for parental type ‘01’
p11 object of class simAutoMarkers for parental type ‘11’
ploidy.level the number of homologous chromosomes as numeric (single value)
prop.par.type proportion of markers for each parental type ‘p01’, ‘p10’ and ‘p11’
n.markers number of markers (Default: 500)
n.individuals number of individuals in the cross (Default: 200)
dose.proportion proportion in each dose – if numeric vector is the same for ‘p01’, ‘p10’ and ‘p11’ else a list with components sQuote{p01}, ‘p10’ and ‘p11’
no.dosage.classes number in each dosage class
no.parType number in each parental type
time.generated time/date when data set generated
seed seed for random number generator seed which could be used to reproduce results (I hope)
call matches arguments when function called

Author(s)

Peter Baker p.baker1@uq.edu.au

See Also

sim.autoCross,simAutoMarkers, sim.autoMarkers


[Package polySegratio version 0.2-3 Index]