SS_parlines {r4ss} | R Documentation |
A simple function which takes as input the full path and filename of a control file for input to Stock Synthesis. Ideally, a Control.SS_New file will be used, so that it represents what SS thinks the inputs are, and not what the user thinks the inputs are.
It returns a table which should contain one line for each parameter in the model. Currently, only the first 7 values are returned, because all parameters have those values. In the future, extended parameter lines could be returned.
Parameter lines are identified as those which have 7 or 14 numeric elements followed by a non-numeric element. It's possible that this system could break down under certain circumstances
SS_parlines(ctlfile = "C:/myfiles/mymodels/myrun/control.ss_new", dir=NULL, verbose = T, active = F)
ctlfile |
File name of control file including path. |
dir |
Alternative input of path, where file is assumed to be "control.ss_new". Default=NULL. |
verbose |
T/F switch for amount of detail produced by function. Default=T. |
active |
Should only active parameters (those with positive phase) be output? Default=F. |
Ian Taylor
## Not run: x <- SS_parlines(ctlfile='Y:/ss/SSv3.03a/Simple/Control.SS_New') head(x) # LO HI INIT PRIOR PR_type SD PHASE Label Line_num # 42 0.05 0.15 0.10000 0.10 0 0.8 -3 NatM_p_1_Fem_GP_1 42 # 43 0.05 0.15 0.10000 0.10 0 0.8 -3 NatM_p_2_Fem_GP_1 43 # 44 1.00 45.00 32.28100 36.00 0 10.0 2 L_at_Amin_Fem_GP_1 44 # 45 40.00 90.00 71.34260 70.00 0 10.0 4 L_at_Amax_Fem_GP_1 45 # 46 0.05 0.25 0.15199 0.15 0 0.8 4 VonBert_K_Fem_GP_1 46 # 47 0.05 0.25 0.10000 0.10 0 0.8 -3 CV_young_Fem_GP_1 47 ## End(Not run)