COndition SpecIfic sub-NEtwork

Documentation for package ‘COSINE’ version 2.0

COSINE-package	COndition SpecIfic subNEtwork identification
choose_lambda	Choose the most appropriate weight parameter lambda
cond.fyx	Compute the ECF-statistics measuring the differential correlation of gene pairs
COSINE	COndition SpecIfic subNEtwork identification
DataSimu	Simulation of the six datasets and the case dataset
diff_gen	Calculate the F-statistics and ECF-statistics
diff_gen_for3	Generate the F-statistics and ECF-statistics for the comparison of three datasets
f.test	To get the F-statistics for each gene
GA_search	Use genetic algorithm to search for the globally optimal subnetwork
get_quantiles	Get the five quantiles of the weight parameter lambda
score_scaling	To get the normalzied F-statistics and ECF-statistics
set1_GA	Result of genetic algorithm search for simulated data set1
set1_scaled_diff	The standardized F-statistics and ECF-statistics for the comparison between simulated data1 and the control data
set1_unscaled_diff	The unstandardized F-statistics and ECF-statistics of simulated dataset 1
simulated_data	The simulated data sets used in the paper