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| PBD-package | Protracted birth-death model of diversification |
| PBD | Protracted birth-death model of diversification |
| pbd_bootstrap | Bootstrap analysis under protracted birth-death model of diversification |
| pbd_brts_density | Node depth probbaility density for protracted birth-death model of diversification |
| pbd_durspec_cumdensity | Cumulative density of duration of speciation under protracted birth-death model of diversification |
| pbd_durspec_density | Probability density for duration of speciation under protracted birth-death model of diversification |
| pbd_durspec_mean | Mean duration of speciation under protracted birth-death model of diversification |
| pbd_durspec_mode | mode of the duration of speciation under protracted birth-death model of diversification |
| pbd_durspec_moment | Moments of duration of speciation under protracted birth-death model of diversification |
| pbd_durspec_quantile | Quantiles of duration of speciation under protracted birth-death model of diversification |
| pbd_durspec_var | Variance in duration of speciation under protracted birth-death model of diversification |
| pbd_loglik | Loglikelihood for protracted birth-death model of diversification |
| pbd_ML | Maximization of loglikelihood under protracted birth-death model of diversification |
| pbd_sim | Function to simulate the protracted speciation process |
| pbd_sim_cpp | Function to simulate the approximate protracted speciation process |