PopGen-package |
Analysing population genetic data within a standardised framework |
allel.rich |
Calculates the allelic richness for a genind object |
allele.dist |
Counts and visualises allele frequencies across loci and subpopulations |
bilby |
Bilby data set |
fric.raster |
a simulated friction map |
gd.kosman |
Individual genetic distance calculation based on Kosman & Leonhard 2005 |
gd.smouse |
Individual genetic distance calculation based on Smouse and Peakall 1999 |
genleastcost |
Least-cost path analysis based on a friction matrix |
landgen |
A simulated genind data set with spatial coordinates |
landgenreport |
Create a landscape genetic report |
lgrMMRR |
Multiple Matrix Regression with Randomization analysis |
null.all |
Checks for the presence of and determine the frequency of null alleles |
PopGen |
Analysing population genetic data within a standardised framework |
popgenreport |
This is the main function of the package. It analyses an object of class 'genind' and then creates a report containing the results of the analysis. There are several routines that can be optionally included in the analysis and there are multip output options including a PDF with the report, R-code and an object ('fname.results') containing all of the results, which can be used for further analyses. |
read.genetable |
Function to convert textfiles into a genind object (the format required for popgenreport) |
spautocor |
Spatial autocorrelation following Smouse and Pekall 1999 |
wassermann |
Partial Mantel tests on costdistance matrices |